Hi dev team, I have a very big problem since I updated to galaxy 17.05 with deeptools from toolshed. Due to a bug in galaxy 17.05 with toolshed installed tools (reported in this issue https://github.com/galaxyproject/galaxy/issues/4591), I re-installed deeptools to try to resolve it. Not resolved really but it's another problem. I temporarly bypassed it. Here is my problem : I've installed deeptools from toolshed and when we try to use "compute matrix" for example, we have this error message : Fatal error: Exit code 1 () Traceback (most recent call last): File "/usr/local/bin/computeMatrix", line 4, in <module> from deeptools.computeMatrix import main ImportError: No module named deeptools.computeMatrix It seems that wrapper are installed but not the tool "deeptools". For more information, here it's the way for the installation : search and install via toolshed Install "suite_deeptools" (version 2.5.1.1.0 : 3d68b716965a) Info in Manage tool dependencies : version=2.5.1, resolver=Conda, green check symbol in the line with a list of all deeptools. Galaxy 17.05, commit cfabe37 (21 sept 2017) I've tried to uninstall/reinstall dependencies with conda but without success. Have you any idea to install the deeptools please ? Thanks. Julie