Thought you would find this conversation amusing.


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Data delivery for HiSeq [9 Updates]

 Topic: Data delivery for HiSeq

Sivakumar Gowrisankar <siva80@gmail.com> Oct 07 10:04AM -0400 ^

Hi,

For those of you who are in a core lab, would you please share how you
deliver data to your customers? I am especially interested in the HiSeq
data.

Thank you
Siva



Davide Cittaro <daweonline@gmail.com> Oct 07 04:06PM +0200 ^

On Oct 7, 2010, at 4:04 PM, Sivakumar Gowrisankar wrote:

> Hi,

> For those of you who are in a core lab, would you please share how you deliver data to your customers? I am especially interested in the HiSeq data.

We are testing galaxy (http://usegalaxy.org) for that.

d


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Davide Cittaro
daweonline@gmail.com
http://daweonline.googlepages.com/



"Kittler, Ellen Ph. D." <Ellen.Kittler@umassmed.edu> Oct 07 10:26AM -0400 ^

I'm ordering a blue ray disk burner for off campus users ! On-campus
users have a pick up area at nearline storage on the high performance
cluster.

Ellie

-----Original Message-----
From: solexa@googlegroups.com [mailto:solexa@googlegroups.com] On
Behalf Of Davide Cittaro
Sent: Thursday, October 07, 2010 10:07 AM
To: solexa@googlegroups.com
Subject: Re: Data delivery for HiSeq


On Oct 7, 2010, at 4:04 PM, Sivakumar Gowrisankar wrote:

> Hi,

> For those of you who are in a core lab, would you please share how you deliver data to your customers? I am especially interested in the HiSeq data.

We are testing galaxy (http://usegalaxy.org) for that.

d


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Davide Cittaro
daweonline@gmail.com
http://daweonline.googlepages.com/

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Terry Camerlengo <terry.camerlengo@gmail.com> Oct 07 10:32AM -0400 ^

Depending on specifics....website and/or FTP server.




Chulhong Kim <cybog337@gmail.com> Oct 07 11:11PM +0900 ^

Dear Siva
In our case we deliver the seq data to customer using Hdd. If you use the
FTP then it spend too much time.
Brst regards.
Chul Kim

2010. 10. 7. 오후 11:04에 "Sivakumar Gowrisankar" <siva80@gmail.com>님이 작성:

Hi,

For those of you who are in a core lab, would you please share how you
deliver data to your customers? I am especially interested in the HiSeq
data.

Thank you
Siva

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aubin thomas <aubinthomas@gmail.com> Oct 07 04:37PM +0200 ^

Hi,

it depends on the type of the files that you want to share. A FTP with
secure connection is suitable if you share only the reads that pass the
filter

On Thu, Oct 7, 2010 at 16:32, Terry Camerlengo



Ammar Husami <ammar.husami@gmail.com> Oct 07 03:16PM -0400 ^

We use a secure file sharing tool that is only available to cchmc faculty
and staff, and we purchased 20GB of space for $50/year. http://bmixythos
.cchmc.org
but we can use it to send data inside and outside the organization.

Ammar Husami
Applications Specialist
Molecular Diagnostics Laboratory
Department of Human Genetics
Cincinnati Children's Hospital Medical Center


On Thu, Oct 7, 2010 at 10:32 AM, Terry Camerlengo <



Terry Camerlengo <terry.camerlengo@gmail.com> Oct 07 03:50PM -0400 ^

Why would you say FTP takes too much time? A typical export file compressed
is around 7-8 GB per lane. On a network connection around 15 Mbs (the
average rates at our institution) you are looking at a download time of 7-10
minutes per lane.

Not fast by any means, but considering the size of the files, it certainly
beats burning things to DVDs and mailing it.

2010/10/7 Chulhong Kim <cybog337@gmail.com>




Andrew Gagne <agagne@gmail.com> Oct 07 04:08PM -0400 ^

We generally distribute data via ftp, although some of our users request
their entire run folder and we transfer that on our internal shared storage
system.

andrew

2010/10/7 Terry Camerlengo <terry.camerlengo@gmail.com>




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