Hi John, we just figured out the problem. Had to follow the instructions at https://wiki.galaxyproject.org/Admin/Config/ApacheProxy: SSL If you place Galaxy behind a proxy address that uses SSL (e.g. https:// URLs), set the following in your Apache config: Toggle line numbers <https://wiki.galaxyproject.org/Admin/Config/ApacheProxy#> <Location "/"> RequestHeader set X-URL-SCHEME https</Location> Many thanks for your help Anna On 21 January 2015 at 11:04, Anna Terry <iseeglass@googlemail.com> wrote:
Hi John,
Unfortunately swapping out this line for the one in the previous version does not work, but get this error when trying to use ucsc rather than just when transferring back: Blocked loading mixed active content " http://genome.ucsc.edu/cgi-bin/hgTables"
Also, we are serving galaxy over https, I'm not sure why it is linking back to http (although it would work because it is would be redirected to https). Is there anywhere I can change the address it links back to so it is https?
Many thanks Anna
On 20 January 2015 at 01:41, John Chilton <jmchilton@gmail.com> wrote:
Ugh - hit send too soon accidentally.
I was trying to say - that I believe this was recently changed to allow Galaxy served over HTTPS to access the UCSC in the linked changeset. I was wondering if you could try to just undo that change and see if things work for you again.
https://bitbucket.org/galaxy/galaxy-central/commits/579d211c2b0fa8ef4195930c...
If that does work - it might work to set that XML block to something like
<inputs action="//genome.ucsc.edu/cgi-bin/hgTables" check_values="false" method="get">
which may correctly tell the web browser to infer HTTP or HTTPS and that would be a change I would be happy to make in -central to fix this problem.
Sorry again for all the e-mails.
-John
P.S. I would definitely serve Galaxy over HTTPS if at all possible - so that might be something you just want to do now to side this problem.
On Mon, Jan 19, 2015 at 8:36 PM, John Chilton <jmchilton@gmail.com> wrote:
Hello Anna,
Can you try something for me -
https://bitbucket.org/galaxy/galaxy-central/commits/579d211c2b0fa8ef4195930c...
On Mon, Jan 19, 2015 at 9:12 AM, Anna Terry <iseeglass@googlemail.com>
Update, Looking at the browser developer tools error logs in firefox I can see
following error: Blocked loading mixed active content "http://galaxy.hpc.qmul.ac.uk/tool_runner"
similar error in chrome:
(index):1 The page at 'https://galaxy.hpc.qmul.ac.uk/' was loaded over HTTPS, but displayed insecure content from 'http://galaxy.hpc.qmul.ac.uk/tool_runner': this content should also be loaded over HTTPS.
genome.ucsc.edu/cgi-bin/hgTables:1 The page at 'https://genome.ucsc.edu/cgi-bin/hgTables' was loaded over HTTPS, but is submitting data to an insecure location at 'http://galaxy.hpc.qmul.ac.uk/tool_runner': this content should also be submitted over HTTPS.
(index):1 Mixed Content: The page at 'https://galaxy.hpc.qmul.ac.uk/' was loaded over HTTPS, but requested an insecure form action 'http://galaxy.hpc.qmul.ac.uk/tool_runner'. This request has been blocked; the content must be served over HTTPS.
Is there any way to change settings so that it points back to https? The server should redirect to https but I guess the browser doesn't know
TIA Anna
On 13 January 2015 at 16:39, Anna Terry <iseeglass@googlemail.com>
wrote:
Hi,
I am having lots of problems with the get data tools installed on our local galaxy server, I'll start with just one.
With the UCSC Main one, I am unable to send data back to galaxy, when
I
click "Send query to Galaxy" nothing happens, the button is unresponsive.
This is in contrast to when I try the same query from the main galaxy server, on the same browser and the content in correctly transferred back to galaxy.
I have no idea how to start debugging this, there is nothing in
wrote: the this? paster.log
Does anyone have any ideas?
TIA, Anna
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