Hi Pietro, I suspect the package is broken. The anaconda.org server is available, but the libgcc-ng file is not where the package expects it to be. I followed your suggestion and it worked... sort of. At least it exposed another error, actually the same problem but with numpy... So I applied the same solution and that worked... sort of. Now the error is:
Traceback (most recent call last): File "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 411, in __get__ val = instance.__dict__[self.name] KeyError: 'size'
During handling of the above exception, another exception occurred:
Traceback (most recent call last): File "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/exceptions.py", line 1043, in __call__ return func(*args, **kwargs) File "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/main.py", line 84, in _main exit_code = do_call(args, p) File "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 82, in do_call exit_code = getattr(module, func_name)(args, parser) File "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/main_create.py", line 37, in execute install(args, parser, 'create') File "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/install.py", line 304, in install handle_txn(unlink_link_transaction, prefix, args, newenv) File "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/cli/install.py", line 320, in handle_txn unlink_link_transaction.print_transaction_summary() File "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/core/link.py", line 877, in print_transaction_summary change_report_str = self._change_report_str(change_report) File "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/core/link.py", line 926, in _change_report_str size = prec.size File "/home/galaxy/galaxy/database/dependencies/_conda/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 417, in __get__ raise AttributeError("A value for {0} has not been set".format(self.name)) AttributeError: A value for size has not been set
The full Galaxy log is attached. Cheers, Keith
On Jun 26, 2019, at 7:31 AM, Pietro Mandreoli <pietro.mandreoli@studenti.unimi.it> wrote:
Hi, probably the package is broken see https://anaconda.org/conda-forge/libgcc-ng/files . Try to install the previous version manually, activating conda and then the conda environment of the tool.
commands: source _conda/bin/activate to activate CONDA cd _conda/envs
source activate <name of the tool env>
then conda install <package> -c <channel>
Best regards,
PM <signaturebeforequotedtext></signaturebeforequotedtext> Il 25/06/19 22:59, Nancy Ide <ide@cs.vassar.edu> ha scritto:
I get this error when trying to run "Plot confusion matrix, precision, recall and ROC and AUC curves":
CondaError: CondaHTTPError: HTTP 404 NOT FOUND for url <https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-7.3.0-hdf63c60_0.t... <https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-7.3.0-hdf63c60_0.tar.bz2>>
as the file libgcc-ng-7.3.0-hdf63c60_0.tar.bz2 does not exist in https://conda.anaconda.org/conda-forge/linux-64/ <https://conda.anaconda.org/conda-forge/linux-64/>
Please help!
Thanks -----------------------------------------------------
Nancy Ide Professor of Computer Science
Department of Computer Science Vassar College Poughkeepsie, New York 12604-0520 USA
tel: (+1 845) 437 5988 fax: (+1 845) 437 7498 email: ide@cs.vassar.edu http://www.cs.vassar.edu/~ide
-----------------------------------------------------
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