Looks to me like tmpfs is full and maybe too small.<div><a href="http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster?highlight=%28temp%3D%29">http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster?highlight=%28temp%3D%29</a> eg suggests setting $TEMP= somewhere sensible.&nbsp;<div>
But that&#39;s not always enough depending on the third party executables you&#39;re running so you might want a bigger /tmpfs too.</div><div><div><div><div><div><div><div><br></div></div></div></div></div></div></div><div class="gmail_extra">
<br><br><div class="gmail_quote">On Wed, Dec 19, 2012 at 6:52 PM, 泽 蔡 <span dir="ltr">&lt;<a href="mailto:caizexi123@yahoo.com.cn" target="_blank">caizexi123@yahoo.com.cn</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div><div style="font-size:12pt;font-family:times new roman,new york,times,serif"><div><span>Hi Ross,</span></div><div><span></span>&nbsp;</div><div><span>Filesystem&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 1K-blocks&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; Used Available Use% Mounted on<br>/dev/sda1&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 90717816&nbsp; 89796388&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 0 100% /<br>
tmpfs&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 66070064&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 372&nbsp; 66069692&nbsp;&nbsp; 1% /dev/shm<br>/dev/sdb1&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 1968618280&nbsp;&nbsp;&nbsp; 199800 1868418484&nbsp;&nbsp; 1% /copy<br>/dev/sdb2&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 7336174008 3759366732 3204151100&nbsp;
 54% /home</span></div><div><span></span>&nbsp;</div><div><span>Then how shall I do? </span></div><div><span></span>&nbsp;</div><div><span>Best regard!</span></div><div><br></div>  <div style="font-family:times new roman,new york,times,serif;font-size:12pt">
 <div style="font-family:times new roman,new york,times,serif;font-size:12pt"> <div dir="ltr"> <font face="Arial"> <div style="margin:5px 0px;padding:0px;border:1px solid rgb(204,204,204);min-height:0px;line-height:0;font-size:0px" readonly>
</div>  <b><span style="font-weight:bold">发件人：</span></b> Ross &lt;<a href="mailto:ross.lazarus@gmail.com" target="_blank">ross.lazarus@gmail.com</a>&gt;<br> <b><span style="font-weight:bold">收件人：</span></b> 泽 蔡 &lt;<a href="mailto:caizexi123@yahoo.com.cn" target="_blank">caizexi123@yahoo.com.cn</a>&gt; <br>
 <b><span style="font-weight:bold">发送日期：</span></b> 2012年12月19日, 星期三, 2:30 下午<br> <b><span style="font-weight:bold">主题:</span></b> Re: [galaxy-dev]
 IOError: [Errno 28] No space left on device<br> </font> </div><div><div class="h5"> <br><div>Possibly not enough space left on the volume being used for temporary files.<div><br><div>What does<div>df</div><div>show?</div>
<div><br></div></div></div><div><br><br><div>On Wed, Dec 19, 2012 at 4:42 PM, 泽 蔡 <span dir="ltr">&lt;<a href="mailto:caizexi123@yahoo.com.cn" rel="nofollow" target="_blank">caizexi123@yahoo.com.cn</a>&gt;</span> wrote:<br>

<blockquote style="margin:0px 0px 0px 0.8ex;padding-left:1ex;border-left-color:rgb(204,204,204);border-left-width:1px;border-left-style:solid"><div><div style="font-family:times new roman,new york,times,serif;font-size:12pt">
<div>Hi all,</div><div>&nbsp;</div><div>When I added a dataset in the Manage data libraries, galaxy reported some erros. Anyone knows what&#39;s wrong?</div>
<div>&nbsp;</div><div>Miscellaneous information: Traceback (most recent call last): File &quot;/home/caizexi/usr/galaxy/tools/data_source/upload.py&quot;, line 384, in __main__() File &quot;/home/caizexi/usr/galaxy/tools/data_source/upload.py&quot;, line 373, in __main__ add_file( dataset, registry, js<br>

Job Standard Error</div><div>Traceback (most recent call last):<br>&nbsp; File &quot;/home/caizexi/usr/galaxy/tools/data_source/upload.py&quot;, line 384, in <br>&nbsp;&nbsp;&nbsp; __main__()<br>&nbsp; File &quot;/home/caizexi/usr/galaxy/tools/data_source/upload.py&quot;, line 373, in __main__<br>

&nbsp;&nbsp;&nbsp; add_file( dataset, registry, json_file, output_path )<br>&nbsp; File
 &quot;/home/caizexi/usr/galaxy/tools/data_source/upload.py&quot;, line 270, in add_file<br>&nbsp;&nbsp;&nbsp; line_count, converted_path = sniff.convert_newlines( dataset.path, in_place=in_place )<br>&nbsp; File &quot;/home/caizexi/usr/galaxy/lib/galaxy/datatypes/sniff.py&quot;, line 99, in convert_newlines<br>

&nbsp;&nbsp;&nbsp; fp.write( &quot;%s\n&quot; % line.rstrip( &quot;\r\n&quot; ) )<br>IOError: [Errno 28] No space left on device</div><div>error<br>Database/Build: ?<br>Number of data lines: None </div><div>&nbsp;</div><div>Best regards</div>

</div></div><br></blockquote></div>
</div>
</div><br><br> </div></div></div> </div>  </div></div></blockquote></div><br><br>
</div></div>