Which me thinks is weird, because my code, when given the -v flag will at least put out some info to stdout, or worse case, some errors to stderr, but those are empty too!

On 12 September 2014 10:31, Björn Grüning <bjoern.gruening@gmail.com> wrote:

as far as I know, it just means your tool did not produced any output, so your results is empty. Nothing more. This is no error, or? The box is not red?


Am 12.09.2014 um 16:28 schrieb Calvin Morrison:
Hi guys,

I am trying to write a tool with a conditional and for whatever reason the
results, well aren't any results. It just says 'no seek', which totally
bewildering. Does anyone know what this means?

Thank you,

my xml file:

<tool id="quikr" name="Quikr">
   <description>Classify with Quikr</description>

   # if $qdb.dbtype == "user"
   quikr -v -k 0 -s ${qdb.dbname} -i ${input} -o ${output}
   # else
   quikr -v -k 0 -s "${qdb.dbname}${qdb.dbsize}".mat.gz -i ${input} -o
   # end if

     <param name="input" type="data" format="fasta" label="input fasta
     <conditional name="qdb">
         <param name="dbtype" type="select" label="Genomes to score against">
           <option value="default" selected="true">Pretrained
           <option value="user">Custom trained quikr database</option>
         <when value="user">
           <param name="dbname" type="data" format="quikrdb" label="custom
trained database"/>
           <param name="dbsize" type="hidden" label="mer size">
             <option value="5">5</option>
         <when value="default">
           <param name="dbname" type="select" label="Choose database">
             <option value="/data/galaxy/data/gg91">Green Genes 91%</option>
             <option value="/data/galaxy/data/gg94">Green Genes 94%</option>
             <option value="/data/galaxy/data/rdp">RDP Trained Set</option>
           <param name="dbsize" type="select" label="mer size">
             <option value="5">5</option>
             <option value="6">6</option>
             <option value="7">7</option>
             <option value="8">8</option>
     <param name="lambda" type="integer" size="6" value="10000"
label="lambda" help="default 10000"/>
     <data name="output" format="tabular" />

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