Running jobs as the "real" user is not available with the PBS job
runner - one has to use the DRMAA interface to submit jobs as the real
user.

That said, the DRMAA runner plugin is compatible with Torque, you just need to compile and use pbs-drmaa, rather than Torque's libdrmaa:

I have created a Trello card to add this functionality:
https://trello.com/c/OddS8bMP

Would be happy to field pull requests to add this - because I doubt
anyone on the core team will be able to get to this anytime soon.
Sorry I don't have better news.

-John

On Sun, Jul 20, 2014 at 11:26 PM, Ping Luo <luop0812@gmail.com> wrote:
I have installed pbs_python module on our cluster to interface Galaxy with
TORQUE. I am able to submit and run jobs on our cluster as the Galaxy user.
I need to run Galaxy jobs as the real user. The instruction in the user
guide is for DRMAA interface. How can I configure running jobs as real user
for TORQUE?

thank,

Ping

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