Hi Hans,

I've seen this error ("configure: error: C compiler cannot create executables”) quite a few times on OS X, and contrary to the message, is usually not related to the installed compiler (all your other packages compiled just fine). I'll check this on my macs, to see if we didn't introduce a regression. My feeling is that one of the include PATHS hasn't been set correctly. Could you post the full INSTALLATION.log ?

Marius

On 3 December 2015 at 00:49, Hans Rudolph <hans.rudolph@sceedo.de> wrote:

Hi Björn,

thanks very much for your efforts. Unfortunately, installation of the new deseq2-1-8-2 (uic, 2015-12-02) still fails for me -

apparently due to the included package_r_3_2_1 which fails with "configure: error: C compiler cannot create executables”
and the R error status stops deseq2 installation with error "/bin/sh: line 7: Rscript: command not found”.

But all the other dependencies in the deseq2-1-8-2 package:

atlas-3-10
cairo-1-12-14
fontconfig-2-11-1
freetype-2-5-2
libpng-1-6-7
libxml2-2-9-1
ncurses-6-0
pixman-0.32-4
pixman-0-32-6
readline-6-3

show the green label “installed” as installation status.

Best regards,
Hans

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