HI Nicola, I did upgrading. It seems that error is gone now but I got these errors. I am not sure if they are critical or due to my settings. galaxy.tools WARNING 2013-02-04 14:04:02,764 A when tag has not been defined for 'master_variable_type (master_variable_type_selector) --> allPairs', assuming empty inputs. galaxy.tools WARNING 2013-02-04 14:04:04,391 A when tag has been defined for 'manipulation (manipulation_selector) --> modify_each_score', but does not appear to be selectable. galaxy.tools.test DEBUG 2013-02-04 14:04:05,164 Error in add_param for report_discordant_pairs: Unable to determine parameter type of test input 'report_discordant_pairs'. Ensure that the parameter exists and that any container groups are defined first. docutils WARNING 2013-02-04 14:04:05,198 <string>:50: (WARNING/2) Literal block expected; none found. galaxy.tools.test DEBUG 2013-02-04 14:04:05,209 Error in add_param for min_coverage_intron: Unable to determine parameter type of test input 'min_coverage_intron'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:05,209 Error in add_param for max_coverage_intron: Unable to determine parameter type of test input 'max_coverage_intron'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,487 Error in add_param for force: Unable to determine parameter type of test input 'force'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for input: Unable to determine parameter type of test input 'input'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group1_1: Unable to determine parameter type of test input 'group1_1'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group1_2: Unable to determine parameter type of test input 'group1_2'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group1_3: Unable to determine parameter type of test input 'group1_3'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group2_1: Unable to determine parameter type of test input 'group2_1'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group2_2: Unable to determine parameter type of test input 'group2_2'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools.test DEBUG 2013-02-04 14:04:06,773 Error in add_param for group2_3: Unable to determine parameter type of test input 'group2_3'. Ensure that the parameter exists and that any container groups are defined first. galaxy.tools INFO 2013-02-04 14:04:07,068 Parsing the tool configuration ./migrated_tools_conf.xml -----Original Message----- From: Nicola Soranzo [mailto:soranzo@crs4.it] Sent: Monday, February 04, 2013 11:52 AM To: Hakeem Almabrazi Cc: Galaxy Dev Subject: Re: [galaxy-dev] File Upload doesn't generate any activity Il giorno lun, 04/02/2013 alle 17.41 +0000, Hakeem Almabrazi ha scritto:
Thank you Nicola,
Should I replace my current galaxy-dist with this version or is there different way to upgrade?
Take a look at this wiki page: http://wiki.galaxyproject.org/Admin/Get% 20Galaxy#Keep_your_code_up_to_date Nicola
-----Original Message----- From: Nicola Soranzo [mailto:soranzo@crs4.it] Sent: Monday, February 04, 2013 10:50 AM To: Hakeem Almabrazi Cc: Dannon Baker; Galaxy Dev Subject: Re: [galaxy-dev] File Upload doesn't generate any activity
Il giorno lun, 04/02/2013 alle 16.33 +0000, Hakeem Almabrazi ha scritto:
Thank you Dannon. Hopefully things should be moving forward from now on.
"This issue with the LWR has been fixed in changeset 8731:3299529e0fe8 which will be in the next distribution release."
That will be awesome.
It's already in galaxy-dist since Saturday 2013/02/02, changeset 8531:3299529e0fe8 .
Kind Regards, Nicola