Hi Paul, It seems that you probably did not use the Emboss tools in your local Galaxy instance before (maybe you have a new instance). If this is the case, you can install the emboss_datatypes repository and the emboss_5 repository from the main Galaxy tool shed using the Admin UI features on your local galaxy instance. See the following sections of the tool shed wiki for details. http://wiki.g2.bx.psu.edu/Tool%20Shed#Automatic_installation_of_Galaxy_tool_... http://wiki.g2.bx.psu.edu/Tool%20Shed#Automatic_installation_of_Galaxy_tool_... Greg Von Kuster On Sep 13, 2012, at 4:46 PM, Paul Tanger wrote:
Hi,
I'm trying to enable all the emboss tools on a local galaxy install. I found this tidbit (below) which I thought might help, but when I look at the tool_conf.xml, I don't see a list of emboss tools to uncomment. What should I try next?
Kelly Vincent kpvincent at bx.psu.edu Fri Jan 14 11:26:37 EST 2011 Previous message: [galaxy-dev] Restricted user builds Next message: [galaxy-dev] API connection error Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] Rob,
When you start the Galaxy server, it looks in tool_conf.xml for which tools to load. Note that functional tests use tool_conf.xml.sample, and we leave the EMBOSS tools commented out in that file, so your tool_conf.xml file will still have them commented out if you haven't changed that. Uncomment the relevant lines and the EMBOSS tools should show up. After making changes to tool_conf.xml, you'll have to restart the server. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: