Hi All,

We’re having problems adding files to data libraries.

We’d like to create links to files instead of copying them into Galaxy. We can create links if there aren’t spaces in the paths. Also, we can copy files into libraries even if there are spaces in the paths.

Unfortunately, we cannot create links to files when their paths contain spaces.

The job standard error and miscellaneous information are:

Miscellaneous information:uploaded RAW file Traceback (most recent call last): File "/share/galaxy/working/002/2615/set_metadata_hnsR90.py", line 1, in <module> from galaxy_ext.metadata.set_metadata import set_metadata; set_metadata() File "/home/galaxy/Galaxy/galaxy-dist

Job Standard Error

Traceback (most recent call last):

  File "/share/galaxy/working/002/2615/set_metadata_hnsR90.py", line 1, in <module>

    from galaxy_ext.metadata.set_metadata import set_metadata; set_metadata()

  File "/home/galaxy/Galaxy/galaxy-dist/lib/galaxy_ext/metadata/set_metadata.py", line 80, in set_metadata

    filename_out = fields.pop( 0 )

IndexError: pop from empty list

error

We’ve set allow_library_path_paste = True in galaxy.ini.

We’ve also tried adding “” or ‘’ around the path and get the following error message:

Invalid paths: “home/galaxy/Galaxy/galaxy-dist/”/share/projects/2014 Test””

Any help or suggestions would be great.

Thanks,

Joe Greer

Proteomics Center of Excellence

Northwestern University