Glad you got it working! Tests that use tool data tables should work in planemo - however you will need to configure the data table for the tool though. Here is an example of the how to setup a test data for a tool data table: https://github.com/jmchilton/picard/commit/4df8974384081ee1bb0f97e1bb8d7f935... planemo will detect the tool data table file automatically if it is sitting new to the tool or an explicit file can be passed in with (--tool_data_table) http://planemo.readthedocs.org/en/latest/commands.html#test-command. -John On Sat, Feb 28, 2015 at 7:15 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Fri, Feb 27, 2015 at 10:36 PM, Dooley, Damion <Damion.Dooley@bccdc.ca> wrote:
Yay, with your tip, galaxy direct tests now work with tool_conf.xml AND data table in place!
Galaxy DOC person: please update https://wiki.galaxyproject.org/Admin/RunningTests to state that tool_conf.xml.sample is NOT used for testing! It is stated in the run_tests.sh help info half way down the page.
Done - well spotted. I updated the run_test.sh help output that line was from.
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