I guess one more question for today.  Our lab will be taking care of all library preps and so we want to simplify and remove a few options including Multiplexing/barcodes, library construction, and library validation.  Where would I change that in nglims?  I can't seem to hack it in the yaml file.  Thanks for your help.


On Thu, Jun 20, 2013 at 4:35 PM, Lee Katz <lskatz@gmail.com> wrote:
After a lot of head banging and then realizing that you stressed "sequencing" I realized I had a capitalization error.  Case-sensitive!  Everything seems to be working fine now, and I will be customizing it some more via the yaml file.

Thank you Brad.  You are awesome that you are so responsive.


On Thu, Jun 20, 2013 at 9:35 AM, Brad Chapman <chapmanb@50mail.com> wrote:

Lee;

> Hi, what roles are embedded in nglims? (am I calling it by the right
> name?)
>
> I have a "sequencing" role which will be given to anyone submitting a
> request, and that seems to be working just fine.  I am also using the yaml
> form to edit the submission form, and I think it's beautifully
> implemented.

The "sequencing" role is the only embedded role and is for the
sequencing team, not individual researchers submitting samples.
Individuals researchers can be regular Galaxy users and will have access
to all of the sample submission forms but not the web forms to move
samples through the back end process.

The idea with the "sequencing" role was exactly as you describe. Give
the sequencing team access to nglims sample tracking without needing
them to be administrators on Galaxy.

Glad you've got things up and running,
Brad



--
Lee Katz, Ph.D.



--
Lee Katz, Ph.D.