There is no documentation for this but it is possible. You need to install R and two R libraries (getopt, Matrix) in order to execute the charts R-script. Once R is configured you can add the charts tool to the tools directory and update your config/tool_conf.xml file accordingly before restarting your local instance.

Having said this, can you specify in more detail why the tool installation fails. Can you install other tools from the toolshed without problems?

I hope this helps.


On Mon, Jul 17, 2017 at 9:53 AM, Steven Shen <ishenweiyan@gmail.com> wrote:
Hi all,

Cytoscape, Bar diagram(NVD3), Horizontal(NVD3) , and other NVD3  visualization tools are working good on my local galaxy  except  the jqplots, such as Box plot, Discrete Histogram,   with error "This visualization requires the 'charts' tool. Please make sure it is installed." It seems i need to install Charts first.

Actually Charts could be installed from the Tool Shed through the Admin Interface, but it failed sometimes as the bad network. so is there any doc about installing Charts/tools through command line?

Thank you.

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