5 Feb
2013
5 Feb
'13
12:53 p.m.
On Mon, Feb 4, 2013 at 7:32 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Monday, February 4, 2013, Luobin Yang wrote:
Hi, Peter,
Thanks for pointing them out!
The phi-blast and psi-blast actually share the same binary, both use the psiblast program in the NCBI BLAST+ tools. When the option -phi_pattern is used, then it does phi-blast searching.
Best, Luobin
Could you give a few command line examples of how you typically use psiblast, focussing in the main options only?
I would find that helpful when putting together a new wrapper - since including all the options right away is overwhelming.
Thanks,
Peter
I suspect we would also need to define another datatype for the PSSM pattern files. That makes things more complicated. Peter