Modi, Amit wrote:
Hi,
We are trying to configure Galaxy to work with our tool.
So far I have been able to configure it well and link it with the cluster to do process all the jobs as per the documentation .
Now what we want is the before the actual processing starts the validations for the input files are done on the Local. And the job processing is done on the cluster.
Is there anyway we can configure this.
We are using sge on the cluster.
Hi Amit, I'm not sure what you mean by input file validation? You can have metadata set on the cluster by setting 'set_metadata_externally = True' in the config file. Additionally, the data source tools like Upload and UCSC can run on the cluster, providing the following are true: 1. The default directory used by Python's tempfile module is cluster-accessible (usually /tmp, so you can change it by setting $TEMP in the environment). 2. The cluster nodes have access to the Internet (NAT is fine). If this is not what you're looking for, please let us know. --nate
Thanks a lot.
Regards, Amit Modi
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