Dear peter, thanks for your comments. I tried to update: `planemo shed_update --shed_target testtoolshed` But planemo also complains about non existent repository: ``` Repository [fasta_regex_finder] does not exist in the targeted Tool Shed. Failed to update repository 'fasta_regex_finder' as it does not exist on the test Tool Shed ``` Cheers, Matthias On 18.12.2017 10:45, Peter Briggs wrote:
Hello Matthias
My reading of the planemo docs it was that "shed_create" just made the repository, and that it had to be followed by the "shed_update" command in order to upload the actual content. (The documentation could probably be clearer on this I think.)
I'm not sure about the error from "shed_diff", maybe related to the repository not having any content.
Best wishes
Peter
-- Peter Briggs peter.briggs@manchester.ac.uk Bioinformatics Core Facility University of Manchester B.1083 Michael Smith Bldg Tel: (0161) 2751482
________________________________________ From: galaxy-dev [galaxy-dev-bounces@lists.galaxyproject.org] on behalf of Matthias Bernt [m.bernt@ufz.de] Sent: Monday, December 18, 2017 9:37 AM To: Galaxy Dev List Subject: [galaxy-dev] tool publishing
Dear dev-list,
I'm just trying to publish my first tool to the testtoolshed via planemo. I got some problem during the process. Maybe someone can kickstart me (I guess I just forgot something).
I followed http://planemo.readthedocs.io/en/latest/publishing.html
The step
`planemo shed_create --shed_target testtoolshed`
``` Repository created cd '/home/berntm/projects/mb-galaxy-tools/fasta_regex_finder' && git rev-parse HEAD cd '/home/berntm/projects/mb-galaxy-tools/fasta_regex_finder' && git diff --quiet Repository [fasta_regex_finder] does not exist in the targeted Tool Shed. ```
When I check online the repository is there but no changeset seems available. Retrying fails (expected):
`planemo shed_create --shed_target testtoolshed`
``` Unexpected HTTP status code: 400: {"err_msg": "You already own a repository named <b>fasta_regex_finder<\/b>, please choose a different name.", "err_code": 400008} ````
Also shed_diff fails
`fasta_regex_finder git:(master) ✗ planemo shed_diff --shed_target testtoolshed`
``` shed_diff: Repository [fasta_regex_finder] does not exist in the targeted Tool Shed. ```
Any idea?
Cheers, Matthias
--
------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de
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-- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann -------------------------------------------