Yes - I am with Iyad - having more context would probably help :). You can inject job_wrapper related stuff into tool execution in a very round about way perhaps by creating a dynamic job destination that consumes the job_wrapper and then creates a job destination with enviornment variables set to whatever it is you job needs. But that solution is not very portable or simple - I can try to walk through the steps in more detail though if it would be useful. -John On Mon, Oct 6, 2014 at 9:28 PM, Kandalaft, Iyad <Iyad.Kandalaft@agr.gc.ca> wrote:
Tell us what you are trying to do and maybe someone might know the way to solve it. It could be easier, the same, or more difficult than you imagined.
Iyad Kandalaft Bioinformatics Programmer Microbial Biodiversity Bioinformatics Science & Technology Branch Agriculture & Agri-Food Canada Iyad.Kandalaft@agr.gc.ca | (613) 759-1228 ________________________________ From: galaxy-dev-bounces@lists.bx.psu.edu [galaxy-dev-bounces@lists.bx.psu.edu] on behalf of Alexandre Defelicibus [adefelicibus@gmail.com] Sent: October 6, 2014 4:50 PM To: <galaxy-dev@bx.psu.edu> Subject: [galaxy-dev] Job wrapper object
Hi all,
I'm developing some tools on my Galaxy instance and I need to get some information about the job that a tool creates.
The question is, how can I have a job_wrapper object in my tool wrapper? I tried to use the reserved variable $__app__, but I got errors. I couldn't import and use the galaxy lib in order to get the job information.
Could someone show me the correct way to do that, with some examples?
I appreciate all the help.
Best regards,
-- Alexandre Defelicibus Mestrando em Bioengenharia Programa de Pós-Graduação em Bioengenharia Universidade de São Paulo - USP
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