On Thursday, November 29, 2012, Fenglou Mao wrote:

I can use aln -t n to ask BWA to use multiple cores if I run it in command line, in Galaxy, I did not find this option even i tried "Full Parameter List", anyone know how to do it? (I installed a local Galaxy server with 64 cores, I want to use multiple cores to run my jobs.)

Thanks,
Frank

The number of cores isn't exposed to the end user (although

in some cases it might make sense to do so), but is rather

down to the Galaxy administrators (in some cases by editing

the defaults in the tool XML or wrapper scripts). There was

a discussion about this on the list recently.

Peter