Do you have a lot of repositories installed from the Tool Shed into you Galaxy instance? if so, the time you're experience may be due to loading the in-memory installed repository registry. Using this registry is optional, but the default configuration setting is to use it. You can set the following to entry to False in your universe_wsgi.ini file and restart your Galaxy server to see if that is the problem. This registry is not currently used by anythin except to display the set of dependent repositories that will be affected if a repository is uninstalled. If this is ot what is causing the slow statup, then I'm not sure where else to look.

#
          Enable use of an in-memory registry with bi-directional
          relationships

#
          between repositories (i.e., in addition to lists of
          dependencies for a

#
          repository, keep an in-memory registry of dependent items for
          each repository.

#manage_dependency_relationships
          = True

Greg Von Kuster

On Mar 25, 2014, at 11:08 AM, Geert Vandeweyer <geert.vandeweyer2@uantwerpen.be> wrote:

Dear all,

I'm wondering if the following behaviour is normal. Since I reinstalled the latest galaxy distribution, every restart hangs/loads for up to 10 minutes at the following lines:

galaxy.model.migrate.check INFO 2014-03-25 15:56:57,965 At database version 118
tool_shed.galaxy_install.migrate.check INFO 2014-03-25 15:56:58,477 At migrate_tools version 9
galaxy.config INFO 2014-03-25 15:56:58,694 Install database targetting Galaxy's database configuration.

After several minutes of no heavy processing (cpu/database is almost idle), the startup continues.

Best,

Geert

--

Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Belgium
Tel: +32 (0)3 275 97 56
E-mail: geert.vandeweyer@ua.ac.be
http://ua.ac.be/cognitivegenetics
http://www.linkedin.com/in/geertvandeweyer

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