On Tue, Sep 29, 2015 at 1:12 PM, Fernandez Edgar <edgar.fernandez@umontreal.ca> wrote:
Hello Björn,
Thank you for answering! When I installed Prokka from the Galaxy ToolShed, all the dependencies were installed too. tbl2asn is one of those dependencies... How would I replace it?
Cordialement / Regards, Edgar Fernandez
The way the NCBI deliberately make tbl2asn expire is very annoying for packaging and breaks strict reproducibility :( I think Bjoern was suggesting manually updating the copy of tbl2asn which the Tool Shed had downloaded (as a quick short term solution). You'd need to find this file within the Tool Shed dependencies folder... Philip - can you update package_tbl2asn_23_7 or add a new package if the version number has changed? Or would you like the IUC group to look after this in future? https://toolshed.g2.bx.psu.edu/view/takadonet/package_tbl2asn_23_7/ Nicola - once that's done, can you update the prokka dependency list - or would that fall to your old colleagues at CRS4? https://toolshed.g2.bx.psu.edu/view/crs4/prokka/ Peter