Dear Peter, I am sorry I do not know the version of my galaxy by using hg. I directly downloaded the zip file from the address: http://dist.g2.bx.psu.edu/galaxy-dist.tip.zip The zipped files are compressed on 2011-06-29. Is this version too old? Thank you for your help. Best Regards, HU Yingwei 2012/2/25 Peter Cock <p.j.a.cock@googlemail.com>
On Saturday, February 25, 2012, Yingwei HU wrote:
Dear Peter,
Thank you for your response. Yes. it is a custom binary file type. I attached the sample binary files. humanK562C_d2.splib is the original one. temp.splib is the uploaded and corrupted one. For definition in Galaxy, I just simply inherit the binary.Binary. The definition is below: In Python script: class Splib( binary.Binary ): """ Class describing a spectral library (splib)""" file_ext = "splib" I did not add the sniffer but specify the file format manually in the page of "get data".
Which version of Galaxy (hg revision) are you using? I'd have to go back over the email archive but I think were some changes made to help user defined formats.
Peter