See line 1925 in lib/galaxy/web/controllers/library_common.py.  Try
adding a bit of debugging to find out if hda.deleted == True when the
copied HistoryDatasetAssociation is created, and whether the source
LibraryDatasetDatasetAssociation is itself deleted (which should be the
only way the resulting hda could be deleted).

Good catch, that does indeed seem to be the issue.  And it only seems to happen with my older data libraries. 

I didn't see a bug report for this, but I'd be happy to file one and/or take a stab at a fix if someone can point me in the right direction in the code.

Lance

Nate Coraor wrote:

Lance Parsons wrote:

I'm running a local instance of Galaxy that has been working quite
well.  However, I've recently run into a problem when importing
datasets from a data library into a history.  The Size on Disk of
the history grows by the size of the imported dataset, however, the
new dataset is not visible (and the number of datasets does not
change in the saved histories view).

Any thoughts on what might be going on here?  Thanks.

Hey Lance,

No real ideas, but Alex Bossers just posted up saying that old library
datasets are importing into his histories as deleted.  Could you check
and see if this is the case in your instance as well?

Thanks,
--nate

-- 
Lance Parsons - Scientific Programmer
134 Carl C. Icahn Laboratory
Lewis-Sigler Institute for Integrative Genomics
Princeton University

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--
Lance Parsons - Scientific Programmer
134 Carl C. Icahn Laboratory
Lewis-Sigler Institute for Integrative Genomics
Princeton University

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