Hi Chris, Can you confirm that you have a recent changeset (today we're at 3192:828d9f9dcb29)? If you're using an earlier version, either update or check that <Galaxy root>/lib/galaxy/datatypes/registry.py contains the following line: 'sam' : 'text/plain', (it should be line 164, as part of the self.mimetypes_by_extension dictionary definition). In either case, make sure the line: <datatype extension="sam" type="galaxy.datatypes.tabular:Sam" display_in_upload="true"/> appears in <Galaxy root>/datatypes_conf.xml. It should be around line 51, inside the tag: <registration converters_path="lib/galaxy/datatypes/converters"> Let us know what you find. Regards, Kelly On Dec 18, 2009, at 11:35 AM, Chris Cole wrote:
Hi,
On our local install, we've just enabled bowtie NGS mapping and although the search runs fine and the output is viewable in Galaxy, any attempt to save it brings down the server.
The only error in paster.log is: galaxy.datatypes.registry WARNING 2009-12-18 16:32:38,517 unknown mimetype in data factory sam
Tried it on large files and small files with the same effect.
Trying save as fails with an 'unable to read file error'. Anyone have any ideas? Cheers,
Chris _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev