It looks like Dave fixed this issue in 4c58aa19a3d7. Thank you! However I am still having import issues. I am now getting the message: "Archive of repository package_bowtie_0_12_7 owned by devteam Import failed: repository owner devteam does not have an account in this Tool Shed." This is on a local toolshed running 9b78595ec11 where I am performing the input from an admin account. I'm guessing the issue is that I have 'use_remote_user=True' for LDAP authentication and that means that a devteam account cannot be automatically created to allow this capsule to be added without modification. Perhaps on import of a capsule (by an administrator) they could be given the option of preserving the existing owners or re-assigning ownership to an existing user (defaulting to self)? Of course, what I really want is inter-toolshed dependancies. Maybe I'm missing something, but I'm finding it quite painful just to get a tool development environment setup that makes use of any existing repositories. thank you for your help, -Will On Wed, Jun 11, 2014 at 12:40 PM, Will Holtz <wholtz@lygos.com> wrote:
I am now able to export capsules from the main/test toolsheds -- thanks Dave! When attempting to import these capsules into my local toolshed (latest_2014.06.02 for changeset fb68af9a775a) I receive the following error:
URL: https://galaxy.lygos.com:99/repository/import_capsule File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__ app_iter = self.application(environ, sr_checker) File '/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/debug/prints.py', line 106 in __call__ environ, self.app) File '/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/wsgilib.py', line 543 in intercept_output app_iter = application(environ, replacement_start_response) File '/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__ return self.application(environ, start_response) File '/home/galaxy/galaxy-dist/lib/galaxy/webapps/tool_shed/framework/middleware/remoteuser.py', line 74 in __call__ return self.app( environ, start_response ) File '/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__ return self.application(environ, start_response) File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '/home/galaxy/galaxy-dist/lib/galaxy/webapps/tool_shed/controllers/repository.py', line 1992 in import_capsule import_util.check_status_and_reset_downloadable( trans, import_results_tups ) File '/home/galaxy/galaxy-dist/lib/tool_shed/util/import_util.py', line 34 in check_status_and_reset_downloadable tip_changeset_revision = repository.tip( trans.app ) AttributeError: 'NoneType' object has no attribute 'tip'
I have seen the same behavior for capsules based on the following repositories from the test toolshed: package_biopython_1_62, package_vienna_rna_2_1, and package_bowtie_0_12_7. I am logged in as an admin user for the import process.
thanks, -Will