When I try to link file paths into a shared data library from the admin menu it fails. I get the following in the log file:

galaxy.jobs DEBUG 2011-11-11 13:24:38,280 (2645) Changing ownership of working  directory with: /usr/bin/sudo -E /home/galaxy/production/Sept06/galaxy-central/sc                                                              ripts/external_chown_script.py ./database/job_working_directory/2645 galaxy 504

galaxy.jobs ERROR 2011-11-11 13:24:38,771 fail(): Missing output file in working  directory:

[Errno 13] Permission denied: '/bioinfoSD/ichorny/test.bam'

galaxy.datatypes.metadata DEBUG 2011-11-11 13:24:38,919 Cleaning up external metadata files

STDOUT has the following :

Job 2645's output dataset(s) could not be read

Also my file get erased:

/bioinfoSD/ichorny/test.bam

Any thoughts?

Thanks,

Ilya

Ilya Chorny Ph.D.

Bioinformatics Scientist I

Illumina, Inc.

9885 Towne Centre Drive

San Diego, CA 92121

Work: 858.202.4582

Email: ichorny@illumina.com

Website: www.illumina.com