Awesome!

Sorry for the inconvenience ...!
Is matplotlib installing for you? Can you confirm this error?

https://github.com/galaxyproject/tools-iuc/issues/417

Thanks,
Bjoern

Am 27.11.2015 um 18:21 schrieb Jose Juan Almagro Armenteros:
> Hello Bjoern,
>
> Yes, that solved the problem.
>
> Thank you!
>
> Regards,
>
> Jose
>
>
>
> 2015-11-27 17:59 GMT+01:00 Björn Grüning <bjoern.gruening@gmail.com>:
>
>> Hi Jose,
>>
>> can you please try to set:
>>
>> enable_beta_tool_command_isolation = True
>>
>> in your galaxy.ini file?
>>
>> Thanks,
>> Bjoern
>>
>> Am 27.11.2015 um 16:01 schrieb Jose Juan Almagro Armenteros:
>>> I bit more of information. I have this problem running tools from the
>> last
>>> version of deepTools (1.5.11.0) , as bamCompare or bamCorrelate. However,
>>> when I run the same tools from the previous version (1.5.9.1.0), they
>> work
>>> correctly. I have reinstalled this last version but nothing. Is it
>> possible
>>> that, as these two versions are using different numpy versions, bx-python
>>> is using the version from the deepTools package and not the one from the
>>> eggs?
>>>
>>> 2015-11-27 13:03 GMT+01:00 Jose Juan Almagro Armenteros <
>> jjalmagro@gmail.com
>>>> :
>>>
>>>> I have tried to remove the bx-python and numpy eggs and then I have
>>>> fetched them again but this didn't work neither.
>>>>
>>>> Any idea why bx-python is not recognizing the proper numpy version?
>>>>
>>>> Regards,
>>>>
>>>> Jose
>>>>
>>>> 2015-11-27 0:53 GMT+01:00 Jose Juan Almagro Armenteros <
>>>> jjalmagro@gmail.com>:
>>>>
>>>>> Hello,
>>>>>
>>>>> I am in the master branch and I recently pull all the changes to my
>> local
>>>>> Galaxy. However, when I run one tool I obtained this error:
>>>>>
>>>>> Fatal error: Matched on Error:
>>>>> Traceback (most recent call last):
>>>>>   File
>> "/steno-internal/projects/galaxy/galaxy-dist/database/job_working_directory/024/24973/set_metadata_GULyCa.py",
>> line 1, in <module>
>>>>>     from galaxy_ext.metadata.set_metadata import set_metadata;
>> set_metadata()
>>>>>   File
>> "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy_ext/metadata/set_metadata.py",
>> line 27, in <module>
>>>>>     import galaxy.model.mapping  # need to load this before we
>> unpickle, in order to setup properties assigned by the mappers
>>>>>   File
>> "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/model/mapping.py",
>> line 21, in <module>
>>>>>     from galaxy.model.custom_types import JSONType, MetadataType,
>> TrimmedString, UUIDType
>>>>>   File
>> "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/model/custom_types.py",
>> line 15, in <module>
>>>>>     from galaxy import app
>>>>>   File
>> "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/app.py", line 14,
>> in <module>
>>>>>     from galaxy.visualization.data_providers.registry import
>> DataProviderRegistry
>>>>>   File
>> "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/visualization/data_providers/registry.py",
>> line 2, in <module>
>>>>>     from galaxy.visualization.data_providers import genome
>>>>>   File
>> "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/visualization/data_providers/genome.py",
>> line 16, in <module>
>>>>>     from bx.bbi.bigbed_file import BigBedFile
>>>>>   File "bigbed_file.pyx", line 1, in init bx.bbi.bigbed_file
>> (lib/bx/bbi/bigbed_file.c:6272)
>>>>>   File "numpy.pxd", line 155, in init bx.bbi.bbi_file
>> (lib/bx/bbi/bbi_file.c:12669)
>>>>> ValueError: numpy.dtype has the wrong size, try recompiling
>>>>>
>>>>> I suppose there is a problem with the bx-python or numpy egg but I am
>> not
>>>>> really sure if is this. I run check_eggs.py and it did nothing and I
>> also
>>>>> try to update numpy for the system, which didn't work neither.
>>>>>
>>>>> Do you know which numpy should I recompile in order to get this to
>> work?
>>>>>
>>>>> Regards,
>>>>>
>>>>> Jose
>>>>>
>>>>
>>>>
>>>
>>>
>>>
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>