[galaxy-dev] [hg] galaxy 1691: Add support for NCBI Blast XML data format.

details: http://www.bx.psu.edu/hg/galaxy/rev/6e9dd26f782f changeset: 1691:6e9dd26f782f user: Greg Von Kuster <greg@bx.psu.edu> date: Wed Jan 07 12:20:35 2009 -0500 description: Add support for NCBI Blast XML data format. 8 file(s) affected in this change: datatypes_conf.xml.sample lib/galaxy/datatypes/registry.py lib/galaxy/datatypes/sniff.py lib/galaxy/datatypes/test/megablast_xml_parser_test1.blastxml lib/galaxy/datatypes/xml.py lib/galaxy/tools/actions/upload.py test/functional/test_sniffing_and_metadata_settings.py tools/metag_tools/megablast_xml_parser.xml diffs (truncated from 4398 to 3000 lines): diff -r 317d5f454dfd -r 6e9dd26f782f datatypes_conf.xml.sample --- a/datatypes_conf.xml.sample Tue Jan 06 13:29:03 2009 -0500 +++ b/datatypes_conf.xml.sample Wed Jan 07 12:20:35 2009 -0500 @@ -41,6 +41,7 @@ <datatype extension="taxonomy" type="galaxy.datatypes.tabular:Taxonomy" display_in_upload="true"/> <datatype extension="tabular" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true"/> <datatype extension="txt" type="galaxy.datatypes.data:Text" display_in_upload="true"/> + <datatype extension="blastxml" type="galaxy.datatypes.xml:BlastXml" display_in_upload="true"/> <datatype extension="txtseq.zip" type="galaxy.datatypes.images:Txtseq" mimetype="application/zip" display_in_upload="true"/> <datatype extension="wig" type="galaxy.datatypes.interval:Wiggle" display_in_upload="true"/> <!-- EMBOSS TOOLS --> @@ -147,17 +148,18 @@ important because some formats are much more loosely defined than others. --> - <sniffer order="05" type="galaxy.datatypes.sequence:Maf"/> - <sniffer order="10" type="galaxy.datatypes.sequence:Lav"/> - <sniffer order="15" type="galaxy.datatypes.sequence:Fasta"/> - <sniffer order="25" type="galaxy.datatypes.sequence:FastqSolexa"/> - <sniffer order="30" type="galaxy.datatypes.interval:Wiggle"/> - <sniffer order="35" type="galaxy.datatypes.images:Html"/> - <sniffer order="40" type="galaxy.datatypes.sequence:Axt"/> - <sniffer order="45" type="galaxy.datatypes.interval:Bed"/> - <sniffer order="50" type="galaxy.datatypes.interval:CustomTrack"/> - <sniffer order="55" type="galaxy.datatypes.interval:Gff"/> - <sniffer order="60" type="galaxy.datatypes.interval:Gff3"/> - <sniffer order="65" type="galaxy.datatypes.interval:Interval"/> + <sniffer order="005" type="galaxy.datatypes.xml:BlastXml"/> + <sniffer order="010" type="galaxy.datatypes.sequence:Maf"/> + <sniffer order="015" type="galaxy.datatypes.sequence:Lav"/> + <sniffer order="020" type="galaxy.datatypes.sequence:Fasta"/> + <sniffer order="025" type="galaxy.datatypes.sequence:FastqSolexa"/> + <sniffer order="030" type="galaxy.datatypes.interval:Wiggle"/> + <sniffer order="035" type="galaxy.datatypes.images:Html"/> + <sniffer order="040" type="galaxy.datatypes.sequence:Axt"/> + <sniffer order="045" type="galaxy.datatypes.interval:Bed"/> + <sniffer order="050" type="galaxy.datatypes.interval:CustomTrack"/> + <sniffer order="055" type="galaxy.datatypes.interval:Gff"/> + <sniffer order="060" type="galaxy.datatypes.interval:Gff3"/> + <sniffer order="065" type="galaxy.datatypes.interval:Interval"/> </sniffers> </datatypes> diff -r 317d5f454dfd -r 6e9dd26f782f lib/galaxy/datatypes/registry.py --- a/lib/galaxy/datatypes/registry.py Tue Jan 06 13:29:03 2009 -0500 +++ b/lib/galaxy/datatypes/registry.py Wed Jan 07 12:20:35 2009 -0500 @@ -3,7 +3,7 @@ """ import os import logging -import data, tabular, interval, images, sequence, qualityscore, genetics +import data, tabular, interval, images, sequence, qualityscore, genetics, xml import galaxy.util from galaxy.util.odict import odict @@ -96,6 +96,7 @@ 'axt' : sequence.Axt(), 'bed' : interval.Bed(), 'binseq.zip' : images.Binseq(), + 'blastxml' : xml.BlastXml(), 'customtrack' : interval.CustomTrack(), 'csfasta' : sequence.csFasta(), 'fasta' : sequence.Fasta(), @@ -119,6 +120,7 @@ 'axt' : 'text/plain', 'bed' : 'text/plain', 'binseq.zip' : 'application/zip', + 'blastxml' : 'text/plain', 'customtrack' : 'text/plain', 'csfasta' : 'text/plain', 'fasta' : 'text/plain', @@ -141,6 +143,7 @@ # because some formats are much more flexibly defined than others. if len(self.sniff_order) < 1: self.sniff_order = [ + xml.BlastXml(), sequence.Maf(), sequence.Lav(), sequence.Fasta(), diff -r 317d5f454dfd -r 6e9dd26f782f lib/galaxy/datatypes/sniff.py --- a/lib/galaxy/datatypes/sniff.py Tue Jan 06 13:29:03 2009 -0500 +++ b/lib/galaxy/datatypes/sniff.py Wed Jan 07 12:20:35 2009 -0500 @@ -160,6 +160,9 @@ Returns an extension that can be used in the datatype factory to generate a data for the 'fname' file + >>> fname = get_test_fname('megablast_xml_parser_test1.blastxml') + >>> guess_ext(fname) + 'blastxml' >>> fname = get_test_fname('interval.interval') >>> guess_ext(fname) 'interval' diff -r 317d5f454dfd -r 6e9dd26f782f lib/galaxy/datatypes/test/megablast_xml_parser_test1.blastxml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/lib/galaxy/datatypes/test/megablast_xml_parser_test1.blastxml Wed Jan 07 12:20:35 2009 -0500 @@ -0,0 +1,4117 @@ +<?xml version="1.0"?> +<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> +<BlastOutput> + <BlastOutput_program>blastn</BlastOutput_program> + <BlastOutput_version>blastn 2.2.17 [Aug-26-2007]</BlastOutput_version> + <BlastOutput_reference>~Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, ~Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), ~"Gapped BLAST and PSI-BLAST: a new generation of protein database search~programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> + <BlastOutput_db>Ecoli.fa</BlastOutput_db> + <BlastOutput_query-ID>lcl|1_0</BlastOutput_query-ID> + <BlastOutput_query-def>0_0.666667</BlastOutput_query-def> + <BlastOutput_query-len>30</BlastOutput_query-len> + <BlastOutput_param> + <Parameters> + <Parameters_expect>10</Parameters_expect> + <Parameters_sc-match>1</Parameters_sc-match> + <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> + <Parameters_gap-open>0</Parameters_gap-open> + <Parameters_gap-extend>0</Parameters_gap-extend> + <Parameters_filter>F</Parameters_filter> + </Parameters> + </BlastOutput_param> + <BlastOutput_iterations> + <Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>lcl|1_0</Iteration_query-ID> + <Iteration_query-def>0_0.666667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>5436010</Hsp_hit-from> + <Hsp_hit-to>5436039</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>CGGACAGCGCCGCCACCAACAAAGCCACCA</Hsp_qseq> + <Hsp_hseq>CGGACAGCGCCGCCACCAACAAAGCCACCA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>2</Iteration_iter-num> + <Iteration_query-ID>lcl|2_0</Iteration_query-ID> + <Iteration_query-def>1_0.600000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>696993</Hsp_hit-from> + <Hsp_hit-to>697022</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>AAAACACCGGATGCTCCGGCGCTGGCAGAT</Hsp_qseq> + <Hsp_hseq>AAAACACCGGATGCTCCGGCGCTGGCAGAT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>3</Iteration_iter-num> + <Iteration_query-ID>lcl|3_0</Iteration_query-ID> + <Iteration_query-def>2_0.400000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>4100018</Hsp_hit-from> + <Hsp_hit-to>4100047</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TTTGCTTTTAGTACACCGGATTCAGAACCA</Hsp_qseq> + <Hsp_hseq>TTTGCTTTTAGTACACCGGATTCAGAACCA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>4</Iteration_iter-num> + <Iteration_query-ID>lcl|4_0</Iteration_query-ID> + <Iteration_query-def>3_0.566667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>2305844</Hsp_hit-from> + <Hsp_hit-to>2305873</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>CCGTCCAGAAAGGTGTATTCATGGGGACGG</Hsp_qseq> + <Hsp_hseq>CCGTCCAGAAAGGTGTATTCATGGGGACGG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>5</Iteration_iter-num> + <Iteration_query-ID>lcl|5_0</Iteration_query-ID> + <Iteration_query-def>4_0.766667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>3457901</Hsp_hit-from> + <Hsp_hit-to>3457930</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + 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<Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>1264131</Hsp_hit-from> + <Hsp_hit-to>1264160</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_qseq> + <Hsp_hseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>1636485</Hsp_hit-from> + <Hsp_hit-to>1636514</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_qseq> + <Hsp_hseq>GCACTTAACCCGCTTCGGCGGGTTTTGTTT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2318694</Hsp_hit-from> + <Hsp_hit-to>2318723</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_qseq> + <Hsp_hseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2777043</Hsp_hit-from> + <Hsp_hit-to>2777072</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_qseq> + <Hsp_hseq>AAACAAAACCCGCCGAAGCGGGTTAAGTGC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>7</Iteration_iter-num> + <Iteration_query-ID>lcl|7_0</Iteration_query-ID> + <Iteration_query-def>6_0.533333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1185124</Hsp_hit-from> + <Hsp_hit-to>1185153</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TAAGCCGTTACTGGCAGCAAGTGCAGGCAA</Hsp_qseq> + <Hsp_hseq>TAAGCCGTTACTGGCAGCAAGTGCAGGCAA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>8</Iteration_iter-num> + <Iteration_query-ID>lcl|8_0</Iteration_query-ID> + <Iteration_query-def>7_0.400000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2458203</Hsp_hit-from> + <Hsp_hit-to>2458232</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TGAATTTACCGTTATCTATCTTGCCTGCCT</Hsp_qseq> + <Hsp_hseq>TGAATTTACCGTTATCTATCTTGCCTGCCT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>10</Iteration_iter-num> + <Iteration_query-ID>lcl|10_0</Iteration_query-ID> + <Iteration_query-def>9_0.400000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>5286666</Hsp_hit-from> + <Hsp_hit-to>5286695</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GCGTTTTGCTAAACTTCTGCCGGAATATAA</Hsp_qseq> + <Hsp_hseq>GCGTTTTGCTAAACTTCTGCCGGAATATAA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>11</Iteration_iter-num> + <Iteration_query-ID>lcl|11_0</Iteration_query-ID> + <Iteration_query-def>10_0.500000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2787672</Hsp_hit-from> + <Hsp_hit-to>2787701</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>AAAGAGGCGAGCAGAGTAAAACGCAGGCAA</Hsp_qseq> + <Hsp_hseq>AAAGAGGCGAGCAGAGTAAAACGCAGGCAA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>13</Iteration_iter-num> + <Iteration_query-ID>lcl|13_0</Iteration_query-ID> + <Iteration_query-def>12_0.700000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>4116145</Hsp_hit-from> + <Hsp_hit-to>4116174</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GCGGACGATCTTCACGGTCGCCACGCGGAC</Hsp_qseq> + <Hsp_hseq>GCGGACGATCTTCACGGTCGCCACGCGGAC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>14</Iteration_iter-num> + <Iteration_query-ID>lcl|14_0</Iteration_query-ID> + <Iteration_query-def>13_0.533333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>5442351</Hsp_hit-from> + <Hsp_hit-to>5442380</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TTCTTGTTGGATGGCATACTCCGGCAGCCA</Hsp_qseq> + <Hsp_hseq>TTCTTGTTGGATGGCATACTCCGGCAGCCA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>15</Iteration_iter-num> + <Iteration_query-ID>lcl|15_0</Iteration_query-ID> + <Iteration_query-def>14_0.666667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>4626492</Hsp_hit-from> + <Hsp_hit-to>4626521</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>ACCCCGATATCGTCGCAGGCGTTGCCGCAC</Hsp_qseq> + <Hsp_hseq>ACCCCGATATCGTCGCAGGCGTTGCCGCAC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>16</Iteration_iter-num> + <Iteration_query-ID>lcl|16_0</Iteration_query-ID> + <Iteration_query-def>15_0.666667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>346897</Hsp_hit-from> + <Hsp_hit-to>346926</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> + <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>1466536</Hsp_hit-from> + <Hsp_hit-to>1466565</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GAAGCGCCTCTTCCAGCGGAGACAGCAGCC</Hsp_qseq> + <Hsp_hseq>GAAGCGCCTCTTCCAGCGGAGACAGCAGCC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1750132</Hsp_hit-from> + <Hsp_hit-to>1750161</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> + <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1908046</Hsp_hit-from> + <Hsp_hit-to>1908075</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> + <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2279107</Hsp_hit-from> + <Hsp_hit-to>2279136</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> + <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>6</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2813407</Hsp_hit-from> + <Hsp_hit-to>2813436</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> + <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>7</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>3939162</Hsp_hit-from> + <Hsp_hit-to>3939191</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> + <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>8</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>4656510</Hsp_hit-from> + <Hsp_hit-to>4656539</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_qseq> + <Hsp_hseq>GGCTGCTGTCTCCGCTGGAAGAGGCGCTTC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>17</Iteration_iter-num> + <Iteration_query-ID>lcl|17_0</Iteration_query-ID> + <Iteration_query-def>16_0.566667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2595157</Hsp_hit-from> + <Hsp_hit-to>2595186</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>ATGTCCTGATCGAGCGGCGTTTTACCGACC</Hsp_qseq> + <Hsp_hseq>ATGTCCTGATCGAGCGGCGTTTTACCGACC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>18</Iteration_iter-num> + <Iteration_query-ID>lcl|18_0</Iteration_query-ID> + <Iteration_query-def>17_0.533333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>717743</Hsp_hit-from> + <Hsp_hit-to>717772</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GGTGTTGAGTGTCCAGGTAATACGCTCTCG</Hsp_qseq> + <Hsp_hseq>GGTGTTGAGTGTCCAGGTAATACGCTCTCG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>20</Iteration_iter-num> + <Iteration_query-ID>lcl|20_0</Iteration_query-ID> + <Iteration_query-def>19_0.566667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1237938</Hsp_hit-from> + <Hsp_hit-to>1237967</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GTTGTAAGCGTCAGAACCGATGCGGTCGGT</Hsp_qseq> + <Hsp_hseq>GTTGTAAGCGTCAGAACCGATGCGGTCGGT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>21</Iteration_iter-num> + <Iteration_query-ID>lcl|21_0</Iteration_query-ID> + <Iteration_query-def>20_0.566667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>4792054</Hsp_hit-from> + <Hsp_hit-to>4792083</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>CGACATCCTGTAGGCTGGCTTCAATGCGAC</Hsp_qseq> + <Hsp_hseq>CGACATCCTGTAGGCTGGCTTCAATGCGAC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>22</Iteration_iter-num> + <Iteration_query-ID>lcl|22_0</Iteration_query-ID> + <Iteration_query-def>21_0.733333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>269757</Hsp_hit-from> + <Hsp_hit-to>269786</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_qseq> + <Hsp_hseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>274007</Hsp_hit-from> + <Hsp_hit-to>274036</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_qseq> + <Hsp_hseq>GGGAAGGCTGACGGGCGTCCACACCACGGC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>23</Iteration_iter-num> + <Iteration_query-ID>lcl|23_0</Iteration_query-ID> + <Iteration_query-def>22_0.566667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2706426</Hsp_hit-from> + <Hsp_hit-to>2706455</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>CGGTATTCCTCAGTTCTCGCTGCATGCCTG</Hsp_qseq> + <Hsp_hseq>CGGTATTCCTCAGTTCTCGCTGCATGCCTG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>24</Iteration_iter-num> + <Iteration_query-ID>lcl|24_0</Iteration_query-ID> + <Iteration_query-def>23_0.600000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1512107</Hsp_hit-from> + <Hsp_hit-to>1512136</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TTGCCGTTACGCACCACGCCTTCAGTAGCG</Hsp_qseq> + <Hsp_hseq>TTGCCGTTACGCACCACGCCTTCAGTAGCG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>25</Iteration_iter-num> + <Iteration_query-ID>lcl|25_0</Iteration_query-ID> + <Iteration_query-def>24_0.733333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2032108</Hsp_hit-from> + <Hsp_hit-to>2032137</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>CGCGGGCGCACCACGTCGCTGCTGCTGTTC</Hsp_qseq> + <Hsp_hseq>CGCGGGCGCACCACGTCGCTGCTGCTGTTC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>26</Iteration_iter-num> + <Iteration_query-ID>lcl|26_0</Iteration_query-ID> + 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</Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>29</Iteration_iter-num> + <Iteration_query-ID>lcl|29_0</Iteration_query-ID> + <Iteration_query-def>28_0.666667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>4405442</Hsp_hit-from> + <Hsp_hit-to>4405471</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + 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</Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>35</Iteration_iter-num> + <Iteration_query-ID>lcl|35_0</Iteration_query-ID> + <Iteration_query-def>34_0.533333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + 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</Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>36</Iteration_iter-num> + <Iteration_query-ID>lcl|36_0</Iteration_query-ID> + <Iteration_query-def>35_0.466667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2250064</Hsp_hit-from> + <Hsp_hit-to>2250093</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>ACTGCTTTGCCGAGATATTCGAGGTTAACC</Hsp_qseq> + <Hsp_hseq>ACTGCTTTGCCGAGATATTCGAGGTTAACC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>37</Iteration_iter-num> + <Iteration_query-ID>lcl|37_0</Iteration_query-ID> + <Iteration_query-def>36_0.433333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>3698178</Hsp_hit-from> + <Hsp_hit-to>3698207</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TGTTGGCAACATGGCGAGCGTAATCAATTA</Hsp_qseq> + <Hsp_hseq>TGTTGGCAACATGGCGAGCGTAATCAATTA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + 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<Hsp_hit-from>4242501</Hsp_hit-from> + <Hsp_hit-to>4242530</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GCAGCAGGATCGGATCGAACTCTGGTTTCT</Hsp_qseq> + <Hsp_hseq>GCAGCAGGATCGGATCGAACTCTGGTTTCT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>40</Iteration_iter-num> + <Iteration_query-ID>lcl|40_0</Iteration_query-ID> + <Iteration_query-def>39_0.400000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>3683151</Hsp_hit-from> + <Hsp_hit-to>3683180</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TAATGCGGCATTCTCCTGATTTATTGTCAC</Hsp_qseq> + <Hsp_hseq>TAATGCGGCATTCTCCTGATTTATTGTCAC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>42</Iteration_iter-num> + <Iteration_query-ID>lcl|42_0</Iteration_query-ID> + <Iteration_query-def>41_0.566667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>789086</Hsp_hit-from> + <Hsp_hit-to>789115</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>AGCTGACGGTCAGCAGGGATACTTCCTGCA</Hsp_qseq> + <Hsp_hseq>AGCTGACGGTCAGCAGGGATACTTCCTGCA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>43</Iteration_iter-num> + <Iteration_query-ID>lcl|43_0</Iteration_query-ID> + <Iteration_query-def>42_0.566667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1714771</Hsp_hit-from> + <Hsp_hit-to>1714800</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GCAGTGACTACATCCGCGAGGTGAATGTGG</Hsp_qseq> + <Hsp_hseq>GCAGTGACTACATCCGCGAGGTGAATGTGG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>44</Iteration_iter-num> + <Iteration_query-ID>lcl|44_0</Iteration_query-ID> + <Iteration_query-def>43_0.466667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>4272582</Hsp_hit-from> + <Hsp_hit-to>4272611</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GCTTTTTCCAGCATCAACGCCACTGAACAA</Hsp_qseq> + <Hsp_hseq>GCTTTTTCCAGCATCAACGCCACTGAACAA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>45</Iteration_iter-num> + <Iteration_query-ID>lcl|45_0</Iteration_query-ID> + <Iteration_query-def>44_0.433333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>5481023</Hsp_hit-from> + <Hsp_hit-to>5481052</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>AAAGTGGTAGATAACGTGGTGCAGACTATG</Hsp_qseq> + <Hsp_hseq>AAAGTGGTAGATAACGTGGTGCAGACTATG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>46</Iteration_iter-num> + <Iteration_query-ID>lcl|46_0</Iteration_query-ID> + <Iteration_query-def>45_0.500000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>1271829</Hsp_hit-from> + <Hsp_hit-to>1271858</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_qseq> + <Hsp_hseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>1357952</Hsp_hit-from> + <Hsp_hit-to>1357981</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_qseq> + <Hsp_hseq>ATCCGCGATAAGGTCATCCGGTATCAGGAA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2310674</Hsp_hit-from> + <Hsp_hit-to>2310703</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq> + <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2769319</Hsp_hit-from> + <Hsp_hit-to>2769348</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq> + <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2991293</Hsp_hit-from> + <Hsp_hit-to>2991322</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_qseq> + <Hsp_hseq>TTCCTGATACCGGATGACCTTATCGCGGAT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>47</Iteration_iter-num> + <Iteration_query-ID>lcl|47_0</Iteration_query-ID> + <Iteration_query-def>46_0.466667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1080570</Hsp_hit-from> + <Hsp_hit-to>1080599</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_qseq> + <Hsp_hseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1476177</Hsp_hit-from> + <Hsp_hit-to>1476206</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_qseq> + <Hsp_hseq>ACCTGTACCCCAGGACCATGGTACATTTAT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>48</Iteration_iter-num> + <Iteration_query-ID>lcl|48_0</Iteration_query-ID> + <Iteration_query-def>47_0.533333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2887871</Hsp_hit-from> + <Hsp_hit-to>2887900</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>ACAATGCAACCAGACCAGCCCGGATCGATA</Hsp_qseq> + <Hsp_hseq>ACAATGCAACCAGACCAGCCCGGATCGATA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>50</Iteration_iter-num> + <Iteration_query-ID>lcl|50_0</Iteration_query-ID> + <Iteration_query-def>49_0.433333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>4152853</Hsp_hit-from> + <Hsp_hit-to>4152882</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>CGTTATACGGAACAACATTTAACTCCAGCG</Hsp_qseq> + <Hsp_hseq>CGTTATACGGAACAACATTTAACTCCAGCG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>51</Iteration_iter-num> + <Iteration_query-ID>lcl|51_0</Iteration_query-ID> + <Iteration_query-def>50_0.466667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>3568677</Hsp_hit-from> + <Hsp_hit-to>3568706</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TTGCTGTTGCCATCGCTTTTCAGGACATAC</Hsp_qseq> + <Hsp_hseq>TTGCTGTTGCCATCGCTTTTCAGGACATAC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>52</Iteration_iter-num> + <Iteration_query-ID>lcl|52_0</Iteration_query-ID> + <Iteration_query-def>51_0.533333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>3739788</Hsp_hit-from> + <Hsp_hit-to>3739817</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>CGACGGTATCGGTACGCAGATTGTGATGGA</Hsp_qseq> + <Hsp_hseq>CGACGGTATCGGTACGCAGATTGTGATGGA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>53</Iteration_iter-num> + <Iteration_query-ID>lcl|53_0</Iteration_query-ID> + <Iteration_query-def>52_0.366667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>3789407</Hsp_hit-from> + <Hsp_hit-to>3789436</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>ATGAGCATCAACATCGAAATCTCAAACCAA</Hsp_qseq> + <Hsp_hseq>ATGAGCATCAACATCGAAATCTCAAACCAA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>55</Iteration_iter-num> + <Iteration_query-ID>lcl|55_0</Iteration_query-ID> + <Iteration_query-def>54_0.400000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>3161991</Hsp_hit-from> + <Hsp_hit-to>3162020</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GTATTCTTCATTGATTTGTAAGCGGGTACC</Hsp_qseq> + <Hsp_hseq>GTATTCTTCATTGATTTGTAAGCGGGTACC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>56</Iteration_iter-num> + <Iteration_query-ID>lcl|56_0</Iteration_query-ID> + <Iteration_query-def>55_0.466667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>4384753</Hsp_hit-from> + <Hsp_hit-to>4384782</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>AAGCGCTGTTCAACATAAATTGGCTGACGG</Hsp_qseq> + <Hsp_hseq>AAGCGCTGTTCAACATAAATTGGCTGACGG</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>57</Iteration_iter-num> + <Iteration_query-ID>lcl|57_0</Iteration_query-ID> + <Iteration_query-def>56_0.433333</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>2915787</Hsp_hit-from> + <Hsp_hit-to>2915816</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>AACCGTCAGCTCTTTACGCAATATTTTGCC</Hsp_qseq> + <Hsp_hseq>AACCGTCAGCTCTTTACGCAATATTTTGCC</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>58</Iteration_iter-num> + <Iteration_query-ID>lcl|58_0</Iteration_query-ID> + <Iteration_query-def>57_0.566667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>294604</Hsp_hit-from> + <Hsp_hit-to>294633</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>CGCGAAATCCTCGACGTCCAGGCACGTATT</Hsp_qseq> + <Hsp_hseq>CGCGAAATCCTCGACGTCCAGGCACGTATT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>59</Iteration_iter-num> + <Iteration_query-ID>lcl|59_0</Iteration_query-ID> + <Iteration_query-def>58_0.300000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1553483</Hsp_hit-from> + <Hsp_hit-to>1553512</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GTTATCCATTAAAATAGATCGGATCGATAT</Hsp_qseq> + <Hsp_hseq>GTTATCCATTAAAATAGATCGGATCGATAT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>60</Iteration_iter-num> + <Iteration_query-ID>lcl|60_0</Iteration_query-ID> + <Iteration_query-def>59_0.300000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1351506</Hsp_hit-from> + <Hsp_hit-to>1351535</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>AAAATCTGCATATCATGATAAGAGTGGTTA</Hsp_qseq> + <Hsp_hseq>AAAATCTGCATATCATGATAAGAGTGGTTA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>2997458</Hsp_hit-from> + <Hsp_hit-to>2997487</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TAACCACTCTTATCATGATATGCAGATTTT</Hsp_qseq> + <Hsp_hseq>TAACCACTCTTATCATGATATGCAGATTTT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>62</Iteration_iter-num> + <Iteration_query-ID>lcl|62_0</Iteration_query-ID> + <Iteration_query-def>61_0.366667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1987157</Hsp_hit-from> + <Hsp_hit-to>1987186</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TCAGTTTGAAAGCTTTGTCAGCCGTTTTTT</Hsp_qseq> + <Hsp_hseq>TCAGTTTGAAAGCTTTGTCAGCCGTTTTTT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>63</Iteration_iter-num> + <Iteration_query-ID>lcl|63_0</Iteration_query-ID> + <Iteration_query-def>62_0.366667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>1667830</Hsp_hit-from> + <Hsp_hit-to>1667859</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>AATCCTAAACCTAGGAATGCCAGAATATCT</Hsp_qseq> + <Hsp_hseq>AATCCTAAACCTAGGAATGCCAGAATATCT</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>64</Iteration_iter-num> + <Iteration_query-ID>lcl|64_0</Iteration_query-ID> + <Iteration_query-def>63_0.566667</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>231418</Hsp_hit-from> + <Hsp_hit-to>231447</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> + <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>2</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>3516862</Hsp_hit-from> + <Hsp_hit-to>3516891</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_qseq> + <Hsp_hseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>3</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>4226650</Hsp_hit-from> + <Hsp_hit-to>4226679</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_qseq> + <Hsp_hseq>TCACGCTCGCAGTCAAGCTGGCTTATGCCA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>4</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>4808457</Hsp_hit-from> + <Hsp_hit-to>4808486</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> + <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>5</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>4904735</Hsp_hit-from> + <Hsp_hit-to>4904764</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> + <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>6</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>5048915</Hsp_hit-from> + <Hsp_hit-to>5048944</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> + <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + <Hsp> + <Hsp_num>7</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>30</Hsp_query-from> + <Hsp_query-to>1</Hsp_query-to> + <Hsp_hit-from>5089922</Hsp_hit-from> + <Hsp_hit-to>5089951</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>-1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_qseq> + <Hsp_hseq>TGGCATAAGCCAGCTTGACTGCGAGCGTGA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps> + </Hit> + </Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>1</Statistics_db-num> + <Statistics_db-len>5528445</Statistics_db-len> + <Statistics_hsp-len>0</Statistics_hsp-len> + <Statistics_eff-space>0</Statistics_eff-space> + <Statistics_kappa>0.711</Statistics_kappa> + <Statistics_lambda>1.374</Statistics_lambda> + <Statistics_entropy>1.31</Statistics_entropy> + </Statistics> + </Iteration_stat> + </Iteration> + <Iteration> + <Iteration_iter-num>65</Iteration_iter-num> + <Iteration_query-ID>lcl|65_0</Iteration_query-ID> + <Iteration_query-def>64_0.500000</Iteration_query-def> + <Iteration_query-len>30</Iteration_query-len> + <Iteration_hits> + <Hit> + <Hit_num>1</Hit_num> + <Hit_id>gnl|BL_ORD_ID|0</Hit_id> + <Hit_def>/depot/data2/galaxy/microbes/eschColi_O157H7EDL933_1/seq/chr.nib:1-5528445</Hit_def> + <Hit_accession>0</Hit_accession> + <Hit_len>5528445</Hit_len> + <Hit_hsps> + <Hsp> + <Hsp_num>1</Hsp_num> + <Hsp_bit-score>59.96</Hsp_bit-score> + <Hsp_score>30</Hsp_score> + <Hsp_evalue>8.38112e-11</Hsp_evalue> + <Hsp_query-from>1</Hsp_query-from> + <Hsp_query-to>30</Hsp_query-to> + <Hsp_hit-from>5440369</Hsp_hit-from> + <Hsp_hit-to>5440398</Hsp_hit-to> + <Hsp_query-frame>1</Hsp_query-frame> + <Hsp_hit-frame>1</Hsp_hit-frame> + <Hsp_identity>30</Hsp_identity> + <Hsp_positive>30</Hsp_positive> + <Hsp_align-len>30</Hsp_align-len> + <Hsp_qseq>GAGATGACGGTTGCAGAGTCATGCGTTTGA</Hsp_qseq> + <Hsp_hseq>GAGATGACGGTTGCAGAGTCATGCGTTTGA</Hsp_hseq> + <Hsp_midline>||||||||||||||||||||||||||||||</Hsp_midline> + </Hsp> + </Hit_hsps>