When we try to save a large file from galaxy (local instance) we get the following. Server should have plenty of resources.<div><br></div><div>Cheers</div><div>Dennis<br><div><br></div><div><div>MemoryError: out of memory</div>
<div>clear this</div><div>clear this</div><div>URL: <a href="http://genome.imb.qfab.org:8080/datasets/3197f0f893217878/display?to_ext=fasta">http://genome.imb.qfab.org:8080/datasets/3197f0f893217878/display?to_ext=fasta</a></div>
<div>Module weberror.evalexception.middleware:364 in respond         view</div><div>&lt;&lt;          try:</div><div>                __traceback_supplement__ = errormiddleware.Supplement, self, environ</div><div>                app_iter = self.application(environ, detect_start_response)</div>
<div>                try:</div><div>                    return_iter = list(app_iter)&gt;&gt;  app_iter = self.application(environ, detect_start_response)</div><div>Module paste.debug.prints:98 in __call__         view</div>
<div>&lt;&lt;          try:</div><div>                status, headers, body = wsgilib.intercept_output(</div><div>                    environ, self.app)</div><div>                if status is None:</div><div>                    # Some error occurred&gt;&gt;  environ, self.app)</div>
<div>Module paste.wsgilib:544 in intercept_output         view</div><div>&lt;&lt;      try:</div><div>            for item in app_iter:</div><div>                output.write(item)</div><div>        finally:</div><div>            if hasattr(app_iter, &#39;close&#39;):&gt;&gt;  output.write(item)</div>
<div>MemoryError: out of memory</div><div>URL: <a href="http://genome.imb.qfab.org:8080/datasets/3197f0f893217878/display?to_ext=fasta">http://genome.imb.qfab.org:8080/datasets/3197f0f893217878/display?to_ext=fasta</a> File &#39;/home/d.gascoigne/Galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py&#39;, line 364 in respond app_iter = self.application(environ, detect_start_response) File &#39;/home/d.gascoigne/Galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py&#39;, line 98 in __call__ environ, self.app) File &#39;/home/d.gascoigne/Galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py&#39;, line 544 in intercept_output output.write(item) MemoryError: out of memory</div>
<div>&lt;?xml version=&quot;1.0&quot; ?&gt; &lt;traceback&gt; &lt;sysinfo&gt; &lt;language version=&quot;2.6.1&quot;&gt; Python &lt;/language&gt; &lt;/sysinfo&gt; &lt;stack&gt; &lt;frame&gt; &lt;module&gt; weberror.evalexception.middleware &lt;/module&gt; &lt;filename&gt; /home/d.gascoigne/Galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py &lt;/filename&gt; &lt;line&gt; 364 &lt;/line&gt; &lt;function&gt; respond &lt;/function&gt; &lt;operation&gt; app_iter = self.application(environ, detect_start_response) &lt;/operation&gt; &lt;operation_context&gt; try: __traceback_supplement__ = errormiddleware.Supplement, self, environ app_iter = self.application(environ, detect_start_response) try: return_iter = list(app_iter) &lt;/operation_context&gt; &lt;/frame&gt; &lt;frame&gt; &lt;module&gt; paste.debug.prints &lt;/module&gt; &lt;filename&gt; /home/d.gascoigne/Galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py &lt;/filename&gt; &lt;line&gt; 98 &lt;/line&gt; &lt;function&gt; __call__ &lt;/function&gt; &lt;operation&gt; environ, self.app) &lt;/operation&gt; &lt;operation_context&gt; try: status, headers, body = wsgilib.intercept_output( environ, self.app) if status is None: # Some error occurred &lt;/operation_context&gt; &lt;/frame&gt; &lt;frame&gt; &lt;module&gt; paste.wsgilib &lt;/module&gt; &lt;filename&gt; /home/d.gascoigne/Galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py &lt;/filename&gt; &lt;line&gt; 544 &lt;/line&gt; &lt;function&gt; intercept_output &lt;/function&gt; &lt;operation&gt; output.write(item) &lt;/operation&gt; &lt;operation_context&gt; try: for item in app_iter: output.write(item) finally: if hasattr(app_iter, &#39;close&#39;): &lt;/operation_context&gt; &lt;/frame&gt; &lt;/stack&gt; &lt;exception&gt; &lt;type&gt; MemoryError &lt;/type&gt; &lt;value&gt; out of memory &lt;/value&gt; &lt;/exception&gt; &lt;/traceback&gt;</div>
<div>&lt;?xml version=&quot;1.0&quot; ?&gt; &lt;traceback&gt; &lt;sysinfo&gt; &lt;language version=&quot;2.6.1&quot;&gt; Python &lt;/language&gt; &lt;/sysinfo&gt; &lt;stack&gt; &lt;frame&gt; &lt;module&gt; weberror.evalexception.middleware &lt;/module&gt; &lt;filename&gt; /home/d.gascoigne/Galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py &lt;/filename&gt; &lt;line&gt; 364 &lt;/line&gt; &lt;function&gt; respond &lt;/function&gt; &lt;operation&gt; app_iter = self.application(environ, detect_start_response) &lt;/operation&gt; &lt;operation_context&gt; try: __traceback_supplement__ = errormiddleware.Supplement, self, environ app_iter = self.application(environ, detect_start_response) try: return_iter = list(app_iter) &lt;/operation_context&gt; &lt;/frame&gt; &lt;frame&gt; &lt;module&gt; paste.debug.prints &lt;/module&gt; &lt;filename&gt; /home/d.gascoigne/Galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py &lt;/filename&gt; &lt;line&gt; 98 &lt;/line&gt; &lt;function&gt; __call__ &lt;/function&gt; &lt;operation&gt; environ, self.app) &lt;/operation&gt; &lt;operation_context&gt; try: status, headers, body = wsgilib.intercept_output( environ, self.app) if status is None: # Some error occurred &lt;/operation_context&gt; &lt;/frame&gt; &lt;frame&gt; &lt;module&gt; paste.wsgilib &lt;/module&gt; &lt;filename&gt; /home/d.gascoigne/Galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py &lt;/filename&gt; &lt;line&gt; 544 &lt;/line&gt; &lt;function&gt; intercept_output &lt;/function&gt; &lt;operation&gt; output.write(item) &lt;/operation&gt; &lt;operation_context&gt; try: for item in app_iter: output.write(item) finally: if hasattr(app_iter, &#39;close&#39;): &lt;/operation_context&gt; &lt;/frame&gt; &lt;/stack&gt; &lt;exception&gt; &lt;type&gt; MemoryError &lt;/type&gt; &lt;value&gt; out of memory &lt;/value&gt; &lt;/exception&gt; &lt;/traceback&gt;</div>
<br>-- <br>Dennis Gascoigne<br>0407 639 995<br><a href="mailto:dennis.gascoigne@gmail.com">dennis.gascoigne@gmail.com</a><br>
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