We Iocally compile 2.7.8 and keep it in a distinct location that our paths references. This is very easy and has worked well for us. Please excuse any typos -- Sent from my iPhone
On Mar 21, 2016, at 5:32 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
Hi D. K.,
We're currently trying a locally compiled Python 2.7 (from source) under the shared Galaxy mount for use with a CentOS 6 cluster and Galaxy server.
This seems to be working once we got the $PATH working for cluster jobs (initially they would try to set the Galaxy metadata using the system Python 2.6, which would fail).
I don't know if this is any easier than using the CenOS Software Collections as suggested by Nicola, especially when it comes to updating the OS.
Peter
On Mon, Mar 21, 2016 at 5:59 PM, Nicola Soranzo <nsoranzo@tiscali.it> wrote: Hi Daniel, I've been using python27 from CentOS Software Collections for quite some time. It's a bit annoying because you have to remember to load it, but it is surely doable.
Cheers, Nicola
On 21/03/16 17:46, D K wrote:
Hi Galaxy Devs,
This may be premature but I read that for Galaxy after 16.01 that the plan is for python 2.6 to no longer be supported. I'm currently running CentOS 6.6 which uses python 2.6. In order to be able to use newer versions of Galaxy is my only option to upgrade to a newer version of CentOS? Is it possible to use Conda, RedHat Software Collections or some other similar method instead of doing this upgrade?
Thanks!
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