I do not think so. Several individual datasets have been deleted (clicked the upper-right X on the history item box) but no History has been permanently deleted. Is there any indication in the database if target dataset or datasets were marked for permanent deletion? In the dataset table, I see fields "deleted", "purged", and "purgable", but nothing that says permanently deleted. ---------------------------------------------- Ravi Sanka ICS Sr. Bioinformatics Engineer J. Craig Venter Institute 301-795-7743 ---------------------------------------------- On 3/13/14 1:45 PM, "Peter Cock" <p.j.a.cock@googlemail.com> wrote:
Have the owners of the old datasets marked them as permanently deleted?
Peter
On Thu, Mar 13, 2014 at 5:35 PM, Sanka, Ravi <rsanka@jcvi.org> wrote:
Greetings,
Despite being an admin, I am unable to remove old datasets from our Galaxy instance. I am following the procedure detailed in:
https://wiki.galaxyproject.org/Admin/Config/Performance/Purge%20Histories %20and%20Datasets
delete_userless_histories.sh purge_histories.sh purge_libraries.sh purge_folders.sh delete_datasets.sh --> desired to remove datasets before their outer container had been deleted purge_datasets.sh
None of the scripts have been changed. They all call cleanup_datasets.py with -d at 10 and -r enabled.
But it does not appear to have any effect. All datasets (both those older than 10 days and those more recent) in <galaxy root>/database/files are still present, despite the -r setting in each script.
Is there some parameter or such that needs to be set in the universe config that will allow this process to work?
---------------------------------------------- Ravi Sanka ICS - Sr. Bioinformatics Engineer J. Craig Venter Institute 301-795-7743 ----------------------------------------------
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