When I try to run a GATK analysis that uses a bam file as input, I get the following error in the html page:
Metadata missing, click the pencil icon in the history item and use the auto-detect feature to correct this issue.
when the input file is a bam file that has not run yet or is still running. So I can not set up multi step analysis or set up a work flow.
I searched the mailing lists and could not find info on this, only a thread discussing wanting to use meta data from bam files to set the ref. genomes for GATK tools.