Michael Steder wrote:
I'm just following the documentation here: https://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy
And I ran into the following error:
$ hg clone https://bitbucket.org/galaxy/galaxy-dist $ cd galaxy-dist $ sh run.sh Fetch successful. Traceback (most recent call last): File "/Users/steder/GO/GoGalaxy/galaxy-dist/lib/galaxy/web/buildapp.py", line 81, in app_factory from galaxy.app import UniverseApplication File "/Users/steder/GO/GoGalaxy/galaxy-dist/lib/galaxy/app.py", line 11, in <module> from galaxy.tools.imp_exp import load_history_imp_exp_tools File "/Users/steder/GO/GoGalaxy/galaxy-dist/lib/galaxy/tools/imp_exp/__init__.py", line 6, in <module> from galaxy.web.base.controller import UsesHistory File "/Users/steder/GO/GoGalaxy/galaxy-dist/lib/galaxy/web/base/controller.py", line 12, in <module> from galaxy.visualization.tracks.data_providers import get_data_provider File "/Users/steder/GO/GoGalaxy/galaxy-dist/lib/galaxy/visualization/tracks/data_providers.py", line 16, in <module> from bx.arrays.array_tree import FileArrayTreeDict File "numpy.pxd", line 119, in init bx.arrays.array_tree (lib/bx/arrays/array_tree.c:11323) ValueError: numpy.dtype does not appear to be the correct type object
I was able to run the previous stable version of Galaxy. Is there something I can do to get galaxy-dist running?
Hi Mike, I'm moving this over to galaxy-dev since it deals with a local installation. It should be working, this would have been a problem for a short time using galaxy-central, but should not have affected -dist. Could you send the output of: python ./scripts/get_platforms.py python -V
Should I be running galaxy-central instead?
No, galaxy-dist is fine (and should be less prone to issues due to cloning/updating at the wrong moment). Thanks, --nate
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