View as: Interactive | Text | XML (full)
⇝ HTTPError:
HTTP Error 500: Internal Server Error
Module weberror.evalexception.middleware:364 in respond
view
>>
app_iter
=
self
.
application
(
environ
,
detect_start_response
)
Module paste.recursive:84 in __call__
view
>>
return
self
.
application
(
environ
,
start_response
)
Module paste.httpexceptions:633 in __call__
view
>>
return
self
.
application
(
environ
,
start_response
)
Module galaxy.web.framework.base:132 in __call__
view
>>
return
self
.
handle_request
(
environ
,
start_response
)
Module galaxy.web.framework.base:190 in handle_request
view
>>
body
=
method
(
trans
,
**
kwargs
)
Module galaxy.web.framework:221 in decorator
view
>>
return
func
(
self
,
trans
,
*
args
,
**
kwargs
)
Module galaxy.webapps.galaxy.controllers.admin_toolshed:908 in prepare_for_install
view
>>
includes_tool_dependencies
)
Module tool_shed.util.common_install_util:130 in get_dependencies_for_repository
view
>>
all_repo_info_dict
=
get_required_repo_info_dicts
(
trans
,
tool_shed_url
,
util
.
listify
(
repo_info_dict
)
)
Module tool_shed.util.common_install_util:360 in get_required_repo_info_dicts
view
>>
response
=
urllib2
.
urlopen
(
request
).
read
()
Module urllib2:127 in urlopen
view
>>
return
_opener
.
open
(
url
,
data
,
timeout
)
Module urllib2:410 in open
view
>>
response
=
meth
(
req
,
response
)
Module urllib2:523 in http_response
view
>>
'http'
,
request
,
response
,
code
,
msg
,
hdrs
)
Module urllib2:448 in error
view
>>
return
self
.
_call_chain
(*
args
)
Module urllib2:382 in _call_chain
view
>>
result
=
func
(*
args
)
Module urllib2:531 in http_error_default
view
>>
raise
HTTPError
(
req
.
get_full_url
(),
code
,
msg
,
hdrs
,
fp
)
HTTPError: HTTP Error 500: Internal Server Error
Hi,I've just updated my galaxy-central version and I can't use the tool shed installer via admin user any more. When I click 'Install to Galaxy' it throws and 500 error.Could you please verify that? I tried the URL from tool_shed_url in the browser and it also doesn't open.Thanks,Adhemar10.129.9.38, 10.129.0.1 - - [10/Sep/2013:16:05:59 -0200] "GET /galaxy/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282 HTTP/1.0" 500 - "http://toolshed.g2.bx.psu.edu/repository/preview_tools_in_changeset?repository_id=c45d6c51a4fcfc6c&changeset_revision=bf1c3f9f8282" "Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95 Safari/537.36"Error - <class 'urllib2.HTTPError'>: HTTP Error 500: Internal Server ErrorFile '/opt/bioinformatics/share/galaxy20130410/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__app_iter = self.application(environ, sr_checker)File '/usr/lib/python2.6/site-packages/paste/recursive.py', line 80 in __call__return self.application(environ, start_response)File '/opt/bioinformatics/share/galaxy20130410/lib/galaxy/web/framework/middleware/remoteuser.py', line 91 in __call__return self.app( environ, start_response )File '/usr/lib/python2.6/site-packages/paste/httpexceptions.py', line 633 in __call__return self.application(environ, start_response)File '/opt/bioinformatics/share/galaxy20130410/lib/galaxy/web/framework/base.py', line 132 in __call__return self.handle_request( environ, start_response )File '/opt/bioinformatics/share/galaxy20130410/lib/galaxy/web/framework/base.py', line 190 in handle_requestbody = method( trans, **kwargs )File '/opt/bioinformatics/share/galaxy20130410/lib/galaxy/web/framework/__init__.py', line 221 in decoratorreturn func( self, trans, *args, **kwargs )File '/opt/bioinformatics/share/galaxy20130410/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 908 in prepare_for_installincludes_tool_dependencies )File '/opt/bioinformatics/share/galaxy20130410/lib/tool_shed/util/common_install_util.py', line 130 in get_dependencies_for_repositoryall_repo_info_dict = get_required_repo_info_dicts( trans, tool_shed_url, util.listify( repo_info_dict ) )File '/opt/bioinformatics/share/galaxy20130410/lib/tool_shed/util/common_install_util.py', line 360 in get_required_repo_info_dictsresponse = urllib2.urlopen( request ).read()File '/usr/lib64/python2.6/urllib2.py', line 126 in urlopenreturn _opener.open(url, data, timeout)File '/usr/lib64/python2.6/urllib2.py', line 397 in openresponse = meth(req, response)File '/usr/lib64/python2.6/urllib2.py', line 510 in http_response'http', request, response, code, msg, hdrs)File '/usr/lib64/python2.6/urllib2.py', line 435 in errorreturn self._call_chain(*args)File '/usr/lib64/python2.6/urllib2.py', line 369 in _call_chainresult = func(*args)File '/usr/lib64/python2.6/urllib2.py', line 518 in http_error_defaultraise HTTPError(req.get_full_url(), code, msg, hdrs, fp)HTTPError: HTTP Error 500: Internal Server ErrorCGI Variables-------------CONTENT_LENGTH: '0'HTTP_ACCEPT: 'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8'HTTP_ACCEPT_ENCODING: 'gzip,deflate,sdch'HTTP_ACCEPT_LANGUAGE: 'pt-BR,pt;q=0.8,en-US;q=0.6,en;q=0.4'HTTP_AUTHORIZATION: 'Basic YWRoZW1hcjpDYWxsIG1lIHRoZSBicmVlemUh'HTTP_COOKIE: 'galaxysession=c6ca0ddb55be603a7b1853fca2041c148b00044fe9cfda0f39abd5fcb4fe71a0bc3b556f2ab9d86b; GUEST_LANGUAGE_ID=pt_BR; COOKIE_SUPPORT=true; JSESSIONID=EC393E44F6CC64AB7CECE0B38408E133'HTTP_HOST: 'www.lmb.cnptia.embrapa.br'HTTP_REFERER: 'http://toolshed.g2.bx.psu.edu/repository/preview_tools_in_changeset?repository_id=c45d6c51a4fcfc6c&changeset_revision=bf1c3f9f8282'HTTP_REMOTE_USER: 'adhemar@'HTTP_USER_AGENT: 'Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/28.0.1500.95 Safari/537.36'HTTP_X_URL_SCHEME: 'https'PATH_INFO: '/admin_toolshed/prepare_for_install'QUERY_STRING: 'tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282'REMOTE_ADDR: '10.129.9.38, 10.129.0.1'REQUEST_METHOD: 'GET'SCRIPT_NAME: '/galaxy'SERVER_NAME: 'www.lmb.cnptia.embrapa.br'SERVER_PORT: '8080'SERVER_PROTOCOL: 'HTTP/1.0'WSGI Variables--------------application: <paste.recursive.RecursiveMiddleware object at 0x8c58d90>is_api_request: Falseoriginal_wsgi.url_scheme: 'http'paste.cookies: (<SimpleCookie: COOKIE_SUPPORT='true' GUEST_LANGUAGE_ID='pt_BR' JSESSIONID='EC393E44F6CC64AB7CECE0B38408E133' galaxysession='c6ca0ddb55be603a7b1853fca2041c148b00044fe9cfda0f39abd5fcb4fe71a0bc3b556f2ab9d86b'>, 'galaxysession=c6ca0ddb55be603a7b1853fca2041c148b00044fe9cfda0f39abd5fcb4fe71a0bc3b556f2ab9d86b; GUEST_LANGUAGE_ID=pt_BR; COOKIE_SUPPORT=true; JSESSIONID=EC393E44F6CC64AB7CECE0B38408E133')paste.expected_exceptions: [<class 'paste.httpexceptions.HTTPException'>]paste.httpexceptions: <paste.httpexceptions.HTTPExceptionHandler object at 0x8c58610>paste.httpserver.thread_pool: <paste.httpserver.ThreadPool object at 0x22bca10>paste.parsed_querystring: ([('tool_shed_url', 'http://toolshed.g2.bx.psu.edu/'), ('repository_ids', 'c45d6c51a4fcfc6c'), ('changeset_revisions', 'bf1c3f9f8282')], 'tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282')paste.recursive.forward: <paste.recursive.Forwarder from /galaxy>paste.recursive.include: <paste.recursive.Includer from /galaxy>paste.recursive.include_app_iter: <paste.recursive.IncluderAppIter from /galaxy>paste.recursive.script_name: '/galaxy'paste.throw_errors: Truerequest_id: '0743e52a1a4c11e39742e41f13e30314'webob._parsed_query_vars: (MultiDict([('tool_shed_url', 'http://toolshed.g2.bx.psu.edu/'), ('repository_ids', 'c45d6c51a4fcfc6c'), ('changeset_revisions', 'bf1c3f9f8282')]), 'tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=c45d6c51a4fcfc6c&changeset_revisions=bf1c3f9f8282')wsgi process: 'Multithreaded'------------------------------------------------------------