A stupid way to do that is to remove the half bottom of your xml and open it using Firefox for example.

If OK

Add the half top of the half bottom -> firefox

If OK

…

If KO

Remove the half bottom of the remain -> firefox

..

It’s stupid but it’s often work :)

Gildas

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Gildas Le Corguillé - Bioinformatician/Bioanalyste

Plateform ABiMS (Analyses and Bioinformatics for Marine Science)
http://abims.sb-roscoff.fr

Member of the Workflow4Metabolomics project

http://workflow4metabolomics.org

Station Biologique de Roscoff - UPMC/CNRS - FR2424
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Le 22 mars 2016 à 12:56, Peter Cock <p.j.a.cock@googlemail.com> a écrit :

I would try validating the broken XML file (e.g. using an online tool,
or an XML aware editor). That might be enough to find the error and
fix it by hand.

I don't know if there is a clever way to regenerate the file instead...

Peter


On Tue, Mar 22, 2016 at 11:49 AM, Rathert, Philipp, Dr.
<philipp.rathert@ibc.uni-stuttgart.de> wrote:

Dear all,


I think I made a really stupid mistake. I edited the shed_tool_con.xml file
to change the order and section of tools.


Doing this I might have introduced an error I cannot locate. However (now
comes the stupidity), I didn't save the old version of the
shed_tool_conf.xml file...


Is there a way to fix this or do I have to reinstall all tools again?


Thank you for your help.


cheers,


Philipp


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