Try installing libbz2-dev (or whatever that's called on your system), since it's not in the normal conda channels. Devon -- Devon Ryan, Ph.D. Email: dpryan@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany On Wed, Jul 5, 2017 at 2:51 PM, Previti <christopher.previti@dkfz-heidelberg.de> wrote:
Dear all,
I was wondering if anybody has seen the following error after installing deeptools in the galaxy interface:
Fatal error: Exit code 1 () Traceback (most recent call last): File "/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/bin/plotCoverage", line 4, in <module> from deeptools.plotCoverage import main File "/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/deeptools/plotCoverage.py", line 15, in <module> import deeptools.countReadsPerBin as countR File "/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/deeptools/countReadsPerBin.py", line 9, in <module> import deeptools.utilities File "/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/deeptools/utilities.py", line 3, in <module> import pysam File "/opt/galaxy/galaxy/database/dependencies/_conda/envs/__deeptools@2.5.1/lib/python3.6/site-packages/pysam/__init__.py", line 5, in <module> from pysam.libchtslib import * ImportError: libbz2.so.1.0: cannot open shared object file: No such file or directory
Has anybody encountered this error before and were you able to resolve it?
Thanks and best regards,
Christopher Previti
-- Dr. Christopher Previti Genomics and Proteomics Core Facility High Throughput Sequencing (W190) Bioinformatician
German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg Germany Room: B2.102 (INF580/TP3) Phone: +49 6221 42-4434
christopher.previti@dkfz.de www.dkfz.de
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