No prob. Actually, I have found the answer thanks to the GalaxyAdmins meeting yesterday, where somebody extensively pointed to Trello ;-) Cheers J Joachim Jacob Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib On 05/15/2013 07:00 PM, Dannon Baker wrote:
Heh, thanks for answering both halves of the email before I could even get to it :)
On Wed, May 15, 2013 at 12:03 PM, Joachim Jacob | VIB | <joachim.jacob@vib.be <mailto:joachim.jacob@vib.be>> wrote:
Already reported in Trello https://trello.com/c/o0S3klAF
Thanks for the fix!
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 <tel:%2B32%209%20244.66.34> Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib
On 05/15/2013 03:19 PM, Joachim Jacob | VIB | wrote:
run_reports.sh dies silently.
Its last will in reports_webapp.log states:
Traceback (most recent call last): File "./scripts/paster.py", line 33, in <module> serve.run() File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 1056, in run invoke(command, command_name, options, args[1:]) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 1062, in invoke exit_code = runner.run(args) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 227, in run result = self.command() File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py", line 650, in command app = loadapp( app_spec, name=app_name, relative_to=base, global_conf=vars) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 350, in loadapp return loadobj(APP, uri, name=name, **kw) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 375, in loadobj return context.create() File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 813, in create return self.object_type.invoke(self) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 249, in invoke return fix_call(context.object, context.global_conf, **context.local_conf) File "/home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/loadwsgi.py", line 97, in fix_call val = callable(*args, **kw) File "/home/galaxy/galaxy-dist/lib/galaxy/webapps/reports/buildapp.py", line 61, in app_factory add_ui_controllers( webapp, app ) File "/home/galaxy/galaxy-dist/lib/galaxy/webapps/reports/buildapp.py", line 33, in add_ui_controllers from galaxy.web.base.controller import BaseUIController File "/home/galaxy/galaxy-dist/lib/galaxy/web/base/controller.py", line 23, in <module> from galaxy.visualization.genome.visual_analytics import get_tool_def File "/home/galaxy/galaxy-dist/lib/galaxy/visualization/genome/visual_analytics.py", line 3, in <module> from galaxy.tools.parameters.basic import IntegerToolParameter, FloatToolParameter, SelectToolParameter File "/home/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py", line 57, in <module> from galaxy.visualization.genome.visual_analytics import TracksterConfig ImportError: cannot import name TracksterConfig
Anybody knowing the recipe to reanimate the patient? Thanks. BTW, this is the first time I am starting up run_reports.sh after the 1 april/8 april update. Did not had this issue before.
Joachim
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