Thanks, Greg

I tried uploading the same tar ball without the tool_data_table_config.xml.sample file and the tools load fine (to troubleshoot I added only tools that actually do not depend on the file). As soon as I add the .sample file to the tar ball I get the error message.

Thanks, Birgit

From: Greg Von Kuster <greg@bx.psu.edu>
Date: Tuesday, June 12, 2012 1:18 PM
To: Birgit Crain <bcrain@completegenomics.com>
Cc: "galaxy-dev@lists.bx.psu.edu" <galaxy-dev@lists.bx.psu.edu>
Subject: Re: [galaxy-dev] tool_data_table_config.xml.sample

Hi Birgit,

I don't see any problem with your xml definition below.  Are you sure the problem is not with another file in the tarball?  If you can send me the tarball, I'll take a look.

Greg Von Kuster

On Jun 12, 2012, at 4:09 PM, Birgit Crain wrote:

Hi 

I'm developing tools that use an entry in the tool_data_table_config.xml file. For upload into a repository I created a tool_data_table_config.xml.sample file with the corresponding table entry. The structure for the file I copied from the  tool_data_table_config.xml. in the galaxy download.

<tables>

<!-- Start location of cgatools crr files -->

<table name="cg_crr_files" comment_char="#">

<columns>value, dbkey, name, path</columns>

<file path="tool-data/cg_crr_files.loc" />

</table>

<!-- End Location of cgatools crr files -->

</tables>

When I upload the tar ball into the repository the tools won't load properly and I get the following message:

not well-formed (invalid token): line 1, column 0

Any suggestions what I'm missing or how to fix this error?

Thanks, Birgit

 

---

 
The contents of this e-mail and any attachments are confidential and only for use by the intended recipient. Any unauthorized use, distribution or copying of this message is strictly prohibited. If you are not the intended recipient please inform the sender immediately by reply e-mail and delete this message from your system. Thank you for your co-operation.

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

 http://lists.bx.psu.edu/

 

---

 
The contents of this e-mail and any attachments are confidential and only for use by the intended recipient. Any unauthorized use, distribution or copying of this message is strictly prohibited. If you are not the intended recipient please inform the sender immediately by reply e-mail and delete this message from your system. Thank you for your co-operation.

<scripts.tar.gz>___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

 http://lists.bx.psu.edu/