Début du message réexpédié :

De: Yvan Le Bras <yvan.le-bras@mnhn.fr>

Objet: Rép : [galaxy-dev] Shiny in Galaxy

Date: 14 mars 2018 à 10:14:14 UTC+1

À: Mohamed Kassam <k.mamoud@gmail.com>, Hans-Rudolf Hotz <hrh@fmi.ch>

Cc: Timothée VIRGOULAY <timothee.virgoulay@mnhn.fr>, Galaxy Dev List <galaxy-dev@lists.galaxyproject.org>, Valentin CHAMBON <valentin.chambon@mnhn.fr>

Dear Mohamed,

Following exchanges with Hans and french colleagues as William from the carpem project (university hospital Georges Pompidou), we have finalized a first gie shiny template for Galaxy-E project. You can refer to the GitHub repo for details, don't hesitate to ask more info...https://github.com/65MO/Galaxy-E/tree/master/GIE

Cheers,.

Yvan

Envoyé depuis mon smartphone Samsung Galaxy.

-------- Message d'origine --------

De : Mohamed Kassam <k.mamoud@gmail.com>

Date : 14/03/2018 09:59 (GMT+01:00)

À : Hans-Rudolf Hotz <hrh@fmi.ch>

Cc : Yvan Le Bras <yvan.le-bras@mnhn.fr>, "Md. Rezaul Karim" <rezaul.karim@insight-centre.org>, Timothée VIRGOULAY <timothee.virgoulay@mnhn.fr>, Valentin CHAMBON <valentin.chambon@mnhn.fr>, Galaxy Dev List <galaxy-dev@lists.galaxyproject.org>

Objet : Re: [galaxy-dev] Shiny in Galaxy

Dear all

I am contacting about the shiny integration into the Galaxy framewrok.

Now, we are running a shiny app outside the Galaxy framework and we are pointing a link in the Galaxy tools that allow the user to open another browser for the use of the shiny app.

Howerver we would like to integrate directly the shiny into Galaxy framewrok, and I would like to know if someone find a solution for doing that.

Best regards

Mohamed

2017-07-11 13:57 GMT+02:00 Hans-Rudolf Hotz <hrh@fmi.ch>:

Hi Yvan

Yes, after an additional week in the South of France, we traveled back safely last weekend.

I use the free version of the shiny server. In addition to what you already have mentioned, we run into another 'feature' of the free version: you cannot set the R path. You need to set the R path in the environment of the user, the shiny server is running as.

I am currently not using IE, since I cannot use Docker in our production environment. Hence the detour via an html page linking to the extra shiny server. Maybe this will change with Singularity in the future......

Using IE is definitively the way forward.

Regards, Hans-Rudolf

On 07/06/2017 10:58 PM, Yvan Le Bras wrote:

Hi Hans, Hi everyone,

I hope your return trip from GCC has been safe! Unfortunately, I didn't take time during gcc to see you Quick and dirty solution... Can we go further on this Shiny / Galaxy integration idea ? It seems that the Shiny licence can be a problem but it appears to me, if I don't make a mistake, that using the open source version of Shiny (without ssl and identification) on Galaxy through IE can be sufficent... no ?

Cheers,

Yvan

----- Mail d'origine -----
De: Hans-Rudolf Hotz <hrh@fmi.ch>
À: Yvan Le Bras <yvan.le-bras@mnhn.fr>, Md. Rezaul Karim <rezaul.karim@insight-centre.org>, Mohamed Kassam <k.mamoud@gmail.com>, Timothée VIRGOULAY <timothee.virgoulay@mnhn.fr>, Valentin CHAMBON <valentin.chambon@mnhn.fr>
Cc: Galaxy Dev List <galaxy-dev@lists.galaxyproject.org>
Envoyé: Mon, 29 May 2017 09:39:10 +0200 (CEST)

Objet: Re: [galaxy-dev] Shiny in Galaxy

Hi Yvan and list

This is great news!

In my limited spare time, I am currently playing with shiny as well. My
current 'quick and dirty' trick goes like this:

The galaxy tool creates a new shiny app and the output of the galaxy
tool is a html page with the URL to the shiny app. I hope, I will have
something ready to show/discuss at GCC

Regards, Hans-Rudolf

On 05/26/2017 04:13 PM, Yvan Le Bras wrote:

Dear Mohamed, Karim, galaxy-dev list,

A rapid e-mail to inform you that we plan to work on this task in the
upcoming weeks with Thimothée and Valentin, copied. We have had some
exchanges with Eric (Rasche) and Björn (Grüning) and it seems that using
the Galaxy "interactive environment" functionality is a good way to
proceed. Don't hesitate to give us more informations to collaborate on
it...

Wishing you a good week end.

Cheers,

Yvan

-------- Message d'origine --------
De : "Md. Rezaul Karim" <rezaul.karim@insight-centre.org>
Date : 26/05/2017 15:45 (GMT+01:00)
À : Mohamed Kassam <k.mamoud@gmail.com>
Cc : Galaxy Dev List <galaxy-dev@lists.galaxyproject.org>
Objet : Re: [galaxy-dev] Shiny in Galaxy

+1

On May 26, 2017 2:44 PM, "Mohamed Kassam" <k.mamoud@gmail.com
<mailto:k.mamoud@gmail.com>> wrote:

Dear all,

I have a shiny application working in my RStudio, but I would like
to integrate it to Galaxy that the users can call my application via
Galaxy .

Thanks in Advance,

Mohamed

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/ <https://lists.galaxyproject.org/>

To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/ <http://galaxyproject.org/search/>

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/