Greg, I think you can do this with dynamic job runners. http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010080.html Step 1) Set: default_cluster_job_runner = dynamic:///python/default_runner Step 2) Create the file `lib/galaxy/jobs/rules/200_runners.py`, with contents something like this: def default_runner(user_email): username = user_email.split("@")[0] return "drmaa://-V -pe batch 8 -A %s/" % username and you should be good to go. -John On Wed, Mar 13, 2013 at 7:12 AM, greg <margeemail@gmail.com> wrote:
Hi guys,
I just wanted to check in and see if anyone had any ideas on this. (It's actually the -A flag I'm after.)
I did try putting this in universe.wsgi:
default_cluster_job_runner = drmaa://-V -pe batch 8 -A Account_Name/
I was thinking galaxy might substitute the user name for "Account_Name" but no luck :-(
-Greg
On Tue, Mar 12, 2013 at 1:42 PM, greg <margeemail@gmail.com> wrote:
In our local galaxy install we want the cluster jobs to be run from the galaxy user but we want to include a -a [account name] to our grid software bills properly.
Here's what I currently have in universe.wsgi:
default_cluster_job_runner = drmaa://-V -pe batch 8/
What I want is something like this:
default_cluster_job_runner = drmaa://-V -pe batch 8 -a [logged in user name]/
Is this possible?
Thanks,
Greg
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