This data was obtained using scripts that are found under $GALAXY_ROOT/scripts/microbes/ and there is a README.txt file available here as well. However, it has been some time since these scripts have been used and it is possible that they have become stale and would require some tweaking to get working properly (IIRC there was some messy webpage scrapping involved).

On Jul 13, 2010, at 2:30 AM, Bossers, Alex wrote:

Hi All,
We have or local galaxy instance running which works fine.
In the get data section the Microbes tool has no local ncbi data. The public instance has it.
What is the best/easiest way to get that data into our local instance of galaxy. Have been browsing the wikis and looked through library and dataset documentations but was unable to resolve this at first glance.
Any help/guidance appreciated.
Thanks
Alex
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