Hello,
It looks like the default wrapper that comes with Galaxy for Tophat2 and Bowtie2 does not include options for selecting how many threads/cores to use. Is there an easy way to get this feature in the wrappers or do I simply need to add it to the wrapper code? I
Alternatively, does anyone know of tested/debugged wrappers for Tophat2/Bowtie2 that have this feature built in?