Dear Nate, Thanks for your information, I will use it next times. By the way, how do we know the status of Galaxy's database (mysql)? I can't make sure if the database starts normally. Best Wishes, Yan On Fri, Apr 1, 2011 at 10:48 AM, Nate Coraor <nate@bx.psu.edu> wrote:
Dear Nate,
Your suggestion is very important for us. You are right, there is other instance of Galaxy to use the socket. I found the ps and kill them, but
are still there, then I using screen -wipe to remove it (I use screen to run the galaxy). It works. Is there any possibly for Galaxy to auto release
Yan Luo wrote: they the
previous port and reuse it in the future version?
It does this now. You would need to reconnect to the screen (using 'screen -r') and stop Galaxy with CTRL-C.
Note that screen is not necessary. You can start and stop Galaxy in the background with:
Start:
% sh run.sh --daemon
Stop:
% sh run.sh --stop-daemon
--nate
Have a nice weekend!
Best Wishes,
Yan
On Fri, Apr 1, 2011 at 10:37 AM, Nate Coraor <nate@bx.psu.edu> wrote:
Dear Nate,
I can't start my galaxy and got the following information, could you
Yan Luo wrote: please
let me know how we can fix it as soon as possible? We were running
system, it was down last night suddenly. Hope we can fix it today.
File
"/mnt/gluster-vol/home/kangtu/tools/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py",
line 151, in server_wrapper **context.local_conf) ... File "/usr/lib/python2.6/SocketServer.py", line 411, in server_bind self.socket.bind(self.server_address) File "<string>", line 1, in bind socket.error: [Errno 98] Address already in use
Something (possibly another instance of Galaxy) is already listening on the port you are trying to start Galaxy on. You can determine what
the that
process is with 'lsof -i :<PORT>' where <PORT> is the port number you connect to Galaxy on. You may need to use sudo for this to succeed.
Assuming it's another Galaxy instance, you can probably find it with 'ps auxwww | grep universe' and then kill that process.
--nate
Looking forward to hearing from you.
Best Wishes,
Yan