This was fixed in galaxy-central last week and should be part of galaxy-dist. What happened is that controllers were migrated and a couple of modules were left out. See changeset 210c39f4bf7f or later, which I believe was fixed on October 4th. In particular, the problem you're seeing had to do with the templates/library/common/library_common.mako pointing to galaxy.web.controllers.library_common instead of galaxy.webapps.galaxy.controllers.library_common. A few other files had also been affected. -Scott ----- Original Message -----
Hi Alex
I am in the same situation, updating our galaxy servers to the "Oct 5th" release (changeset: 7824:b5bda7a5c345), and I have encountered the same problem. I guess, there are actually two problems:
First problem - this happens with a fresh install: ==================================================
I can't create a library at all, I get the following error message:
Error attempting to display contents of library (foo): No module named controllers.library_common.
There have been a few commits on "library_common.py" over the last few days, which might solve this problem.....?
Second problem - this happens after upgrading an existing installation ======================================================================
Like the situation you reported earlier this morning, I get:
Error attempting to display contents of library (haruhotz): name 'UsesFormDefinitions' is not defined.
I manage to track down the problem to the fact that
in the old version, we've had
~/lib/galaxy/web/controllers/
which apparently has been replaced by
~/lib/galaxy/webapps/galaxy/controllers/
if I remove ~/lib/galaxy/web/controllers/
I get a new error:
Error attempting to display contents of library (haruhotz): No module named library_common.
which is very similar to the error you get with a fresh install
Obviously, old stuff (ie ~/lib/galaxy/web/controllers/) is still used after the upgrade.
Sorry, no solution yet, but maybe it helps the developers to track down the problem and help us getting the servers running again.
Regards Hans-Rudolf
On 10/18/2012 10:48 AM, Alexander Graf wrote:
Hi, yesterday I updated Galaxy to the latest revision and now it is not possible to access any Data Libraries or to create a new one. Galaxy shows me a read box with following error message:
*Error attempting to display contents of library (100326_HWUSI-EAS632R_0002): name 'UsesFormDefinitions' is not defined.*
The log file message is:
/"GET /galaxy/library_common/browse_library?sort=name&webapp=galaxy&f-description=All&f-name=All&page=1&cntrller=library&show_item_checkboxes=false&async=false&operation=browse&id=9d04ee723dc2cac7 HTTP/1.1" 302 - "http://x.x.x.x/galaxy/library/browse_libraries?status=error&use_panels=False&message=Error+attempting+to+display+contents+of+library+%100326_HWUSI-EAS632R_0002%29%3A+name+__sq__UsesFormDefinitions__sq__+is+not+defined." "Mozilla/5.0 (X11; Linux x86_64) /
Any ideas how to solve this problem or were to start troubleshooting?
Thank you in advance
Alex
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