On Thu, Oct 17, 2013 at 11:36 AM, John Chilton chilton@msi.umn.edu wrote:
I broke the TaskWrapper last week with my exit code handling "fix", the double semi-colon thing you are seeing there. Your fix would break non-task split jobs so that is probably the problem(?) Hopefully? Want to revert 8e001dc9675c and pull in the changeset I just pushed out.
Otherwise, I will test out task splitting later today.
I am very sorry.
-John
Thanks John,
Those of us running with galaxy-dist expect minor breakage from time to time - I do this to avoid more pain if the problems were not spotted by the community and reached galaxy-central and thus our production Galaxy instance.
(And with the job splitting not being enabled by default, I am aware that I am in a relatively small group of Galaxy admins using it.)
I don't think my fix hurts non-task split jobs, but I will now try your fix on the default branch:
https://bitbucket.org/galaxy/galaxy-central/commits/329ea7a83af4f389a7c95ee4...
This appears to also address a metadata issue, which if I am lucky may be the fix for this issue?:
http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-October/017031.html
Thanks,
Peter