Nate Coraor wrote at 10:19 AM on Wednesday, December 9, 2009:
I cannot get DRMAA_python to compile/scramble. The linker does not recognize the -R flag:
John Eppley wrote: This is a runtime linker issue - OS X (10.4 especially) does runtime linking oddly. I've committed a fix for it in changeset 3161:b400212305b6, which should be on our public repository in a few days. Or, you can pull directly from our central dev repo at: http://bitbucket.org/galaxy/galaxy-central/
We had the same problem. How can we integrate your fix into a new Galaxy build? I assume that would mean simply downloading and installing your new "DRMAA_python-macosx.py" script in the scripts/scramble directory and then calling it from the right place. Where might that be? Dean A. Snyder Senior Programmer/Analyst Center for Inherited Disease Research (CIDR) Johns Hopkins School of Medicine Bayview Research Campus 333 Cassell Dr, Triad Bldg, Suite 2000 Baltimore, MD 21224 www.cidr.jhmi.edu cell:717 668-3048 office:410-550-4629