Dear Community Members

Complete Genomics, Inc. is happy to announce the release of a CGA Tools™ implementation in Galaxy. CGA Tools™  is an open source project to provide tools for downstream analysis of Complete Genomics Whole Genome Sequencing data. This first release includes the most commonly used functions of CGA Tools™ such as listvariants, testvariants, calldiff, snpdiff, junctiondiff, join and varfilter. Ongoing development will add other functions of CGA Tools™, which were not part of this release, and a variety of data analysis workflows.

There are two repositories available for download from the Galaxy Tools Shed: a linux  version, cg_cgatools_linux, and a Mac OSX version, cg_cgatools_mac_osx. Both repositories are bundled with the latest version of CGA Tools™ (1.5.0.31) for the respective operating system and contain instructions for automated and manual installation of the tools, as well as instructions for the download and installation of reference genome files.

Please reply to this post with any comments to this release and suggestions for future development, or contact us at ProfServ@completegenomics.com

Best regards

Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics, Inc.
 
 
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