The second setup does not work (RH 6.4, python 2.6.6, LSF 9.1.2). It's a server running Galaxy which is meant to submit jobs to an LSF cluster. When I similarly pick and download a file I get
Job <72266> is submitted to queue <short>.
./run.sh: line 79: 99087 Segmentation fault python ./scripts/paster.py serve universe_wsgi.ini $@
For the moment, I'm not bothered with the full server setup, I'm just testing whether Galaxy works with LSF and therefore run ./run.sh as a user.
The job configuration job_conf.xml is identical in both cases:
<?xml version="1.0"?>
<job_conf>
<plugins>
<plugin id="lsf" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner">
<param id="drmaa_library_path">/opt/gridware/lsf/9.1/linux2.6-glibc2.3-x86_64/lib/libdrmaa.so</param>
</plugin>
</plugins>
<handlers>
<handler id="main"/>
</handlers>
<destinations default="lsf_default">
<destination id="lsf_default" runner="lsf">
<param id="nativeSpecification">-W 24:00</param>
</destination>
</destinations>
</job_conf>
run.sh is only changed to allow remote access.
Most recently I tried replacing python with 2.7.5 to no avail. Still the same kind of error. I also updated Galaxy.
Any hints would be much appreciated. Thank you