Marc, What you're seeing is likely Galaxy setting metadata like line counts, etc. One first step would be to check your datatypes_conf.xml and look for the attribute max_optional_metadata_filesize. You can set this on a per-filetype basis, or, if you'd like to set it for everything, you could set your data entry (everything inherits from data) like so: <datatype extension="data" type="galaxy.datatypes.data:Data" mimetype="application/octet-stream" max_optional_metadata_filesize="1048576" /> This will tell galaxy not to set optional metadata on files larger than 1MB, and it might resolve the issue you're seeing. -Dannon On Apr 22, 2011, at 10:25 AM, Marc Bras wrote:
Hi All,
I use Galaxy on a compute cluster and each job is launch in a node. When I launch a workflow and when it generates very huge files (some Go), the job finish (I can see that with 'qstat' command) but Galaxy takes several minutes (or some hours !!) to display a green Box in history. It seems running... but it's already finished in the cluster !!
I think Galaxy is checking the output file...
Is it normal ?
Is it possible to skip this check ?
Thanks in advance,
Marc
-- Marc Bras
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Marc.Bras@versailles.inra.fr
INRA-URGI: Unité de Recherche Génomique Info Centre de Recherche de Versailles-Grignon Route de Saint Cyr 78026 Versailles - FRANCE
Tel: +33 1 30 83 34 70
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