On Dec 5, 2011, at 3:02 PM, Leon Mei wrote:
Dear all,
Today I upgraded our NBIC server from an older release (fetched on July 5th, 2011) to the latest version in galaxy-dist. After execute "hg update" and "sh manage_db upgrade" and merge some local configurations, I successfully restarted the server. However once I access the server from a web browser, Galaxy crashed.
Log file complains that some tables don't exist: == ProgrammingError: (ProgrammingError) (1146, "Table 'galaxy.user_quota_association' doesn't exist") u'SELECT user_quota_association.id AS user_quota_association_id, user_quota_association.user_id AS user_quota_association_user_id, user_quota_association.quota_id AS user_quota_association_quota_id, user_quota_association.create_time AS user_quota_association_create_time, user_quota_association.update_time AS user_quota_association_update_time \nFROM user_quota_association \nWHERE %s = user_quota_association.user_id' [1L] ==
A check in mysql confirms that only the following 3 tables were added during the migration from schema 79 to 85: * default_quota_association * quota * tool_shed_repository
The following 9 tables are missing: cloud_*, user_quota_association, group_quota_association
Hi Leon, Were there any errors output when you ran mange_db.sh upgrade? --nate
Has anyone experienced a similar problem? Any hint on how to solve this is highly appreciate!
Thanks, Leon
-- Hailiang (Leon) Mei Netherlands Bioinformatics Center BioAssist NGS Taskforce - https://wiki.nbic.nl/index.php/Next_Generation_Sequencing Skype: leon_mei Mobile: +31 6 41709231 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: